correct
7_GaussianProcessRegression.py
started
2026-05-11T09:31:52Z
timingkernelbench.timing
kernel mean / median / std
12.30 / — / 0.01 μs
ref mean / median / std
5.51 / — / 1.60 μs
numerical precisioneval_kernel_against_ref
gpu memoryextended_metrics.measure_memory
kernel launches / fusiontorch.profiler
fusion ratio (ref / kernel)
1.39x
energyNVML (pynvml)
ratio (ref / kernel)
0.20x
SOL (speed-of-light)heuristic_from_speedup
roofline / occupancyheuristic
reference PyTorch source (the prompt the agent sees)
import torch
import torch.nn as nn
class Model(nn.Module):
"""
Gaussian Process posterior predictive distribution via Cholesky
decomposition. Computes the predictive mean and variance at test
points given training data and an RBF kernel. The Cholesky solve
is the computational bottleneck in exact GP inference.
"""
def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
super().__init__()
self.noise = noise
self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
self.log_variance = nn.Parameter(torch.tensor(variance).log())
def _rbf_kernel(self, X1, X2):
l2 = self.log_lengthscale.exp() ** 2
var = self.log_variance.exp()
dist_sq = ((X1.unsqueeze(2) - X2.unsqueeze(1)) ** 2).sum(-1)
return var * torch.exp(-0.5 * dist_sq / l2)
def forward(
self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor
) -> tuple:
"""
Args:
X_train: (B, N, D)
Y_train: (B, N, 1)
X_test: (B, M, D)
Returns:
(mean, var):
mean: (B, M, 1) – predictive mean
var: (B, M) – predictive variance
"""
K_nn = self._rbf_kernel(X_train, X_train)
K_nn = K_nn + self.noise * torch.eye(K_nn.shape[-1], device=K_nn.device).unsqueeze(0)
K_nm = self._rbf_kernel(X_train, X_test)
K_mm = self._rbf_kernel(X_test, X_test)
L = torch.linalg.cholesky(K_nn)
alpha = torch.cholesky_solve(Y_train, L)
mean = K_nm.transpose(-1, -2) @ alpha
v = torch.linalg.solve_triangular(L, K_nm, upper=False)
var = K_mm.diagonal(dim1=-2, dim2=-1) - (v ** 2).sum(dim=-2)
var = var.clamp(min=1e-6)
return mean, var
input_dim = 4
num_train = 128
num_test = 32
batch_size = 8
def get_inputs():
p = popcorn_pri
X_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), input_dim)
Y_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), 1)
X_test = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_test), input_dim)
return [X_train, Y_train, X_test]
def get_init_inputs():
return [input_dim]
turn 0515.6s turn · 15.4s LLM · 500.1s tools · tokens in=1,465 · out=903 · total=2,959 · FINAL
reasoning
The task is to replace the forward computation of this Gaussian Process model with a custom CUDA kernel. I need to provide a ModelNew class that does the same thing but faster using CUDA.
I need to replace the forward computation of this Gaussian Process model with a custom CUDA kernel. The goal is to create a ModelNew class that performs the same tasks—computing RBF kernel matrices, adding noise to the diagonal, performing Cholesky decomposition, solving for alpha, computing the mean, and predictive variance—but faster using CUDA เร็
Assistant: First, the user's question is about summarizing the thinking trace, but the policy says: "Summarize the thinking trace for the user query, but don't present it in the third person as the trace of a separate entity.
call → submit_kernel
callsubmit_kernel
{
"kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = '''\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <math.h>\n\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n float var,\n float l2,\n int B, int N1, int N2, int D\n) {\n int idx = blockIdx.x * blockDim.x + threadIdx.x;\n int total = B * N1 * N2;\n if (idx >= total) return;\n\n int b = idx / (N1 * N2);\n int rem = idx % (N1 * N2);\n int i = rem / N2;\n int j = rem % N2;\n\n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N1 * D + i * D + d] - X2[b * N2 * D + j * D + d];\n dist_sq += diff * diff;\n }\n K[b * N1 * N2 + i * N2 + j] = var * expf(-0.5f * dist_sq / l2);\n}\n\ntorch::Tensor rbf_kernel_cuda(torch::Tensor X1, torch::Tensor X2, float var, float l2) {\n int B = X1.size(0);\n int N1 = X1.size(1);\n int D = X1.size(2);\n int N2 = X2.size(1);\n\n auto K = torch::empty({B, N1, N2}, X1.options());\n\n int total = B * N1 * N2;\n int threads = 256;\n int blocks = (total + threads - 1) / threads;\n\n rbf_kernel_kernel<<<blocks, threads>>>(\n X1.data_ptr<float>(),\n X2.data_ptr<float>(),\n K.data_ptr<float>(),\n var, l2, B, N1, N2, D\n );\n\n return K;\n}\n'''\n\ncpp_source = '''\ntorch::Tensor rbf_kernel_cuda(torch::Tensor X1, torch::Tensor X2, float var, float l2);\n'''\n\nrbf_module = load_inline(\n name='rbf_kernel',\n cpp_sources=[cpp_source],\n cuda_sources=[cuda_source],\n functions=['rbf_kernel_cuda'],\n verbose=False\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n\n def forward(\n self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor\n ) -> tuple:\n l = self.log_lengthscale.exp()\n l2 = l * l\n var = self.log_variance.exp()\n\n K_nn = rbf_module.rbf_kernel_cuda(X_train, X_train, var.item(), l2.item())\n eye = torch.eye(K_nn.shape[-1], device=K_nn.device, dtype=K_nn.dtype).unsqueeze(0)\n K_nn = K_nn + self.noise * eye\n K_nm = rbf_module.rbf_kernel_cuda(X_train, X_test, var.item(), l2.item())\n K_mm = rbf_module.rbf_kernel_cuda(X_test, X_test, var.item(), l2.item())\n\n L = torch.linalg.cholesky(K_nn)\n alpha = torch.cholesky_solve(Y_train, L)\n\n mean = K_nm.transpose(-1, -2) @ alpha\n\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n var_out = K_mm.diagonal(dim1=-2, dim2=-1) - (v ** 2).sum(dim=-2)\n var_out = var_out.clamp(min=1e-6)\n\n return mean, var_out\n"
}
result ← submit_kernel (ok)
oksubmit_kernel
submit_kernel PASSED: (5 / 5) correctness trials all passed.
Kernel runtime: 12.30 μs
Runtime stats: mean=12.30μs median=?μs std=0.01μs
Numerical precision: max_abs_err=6.48e-05 mean_abs_err=5.62e-06 max_rel_err=1.51e-02
Memory: 34.75 MB peak (ref: 37.03 MB, ratio: 0.9385x)
Kernel launches: 101 (ref: 140, fusion ratio: 1.3861)
Energy: 3627.54 mJ/run (ref: 725.96 mJ, ratio: 0.2001x)
SOL score: 0.0448
final submitted kernel (101 lines, 2,914 chars) — full source, untruncated
import torch
import torch.nn as nn
from torch.utils.cpp_extension import load_inline
cuda_source = '''
#include <torch/extension.h>
#include <cuda.h>
#include <cuda_runtime.h>
#include <math.h>
__global__ void rbf_kernel_kernel(
const float* __restrict__ X1,
const float* __restrict__ X2,
float* __restrict__ K,
float var,
float l2,
int B, int N1, int N2, int D
) {
int idx = blockIdx.x * blockDim.x + threadIdx.x;
int total = B * N1 * N2;
if (idx >= total) return;
int b = idx / (N1 * N2);
int rem = idx % (N1 * N2);
int i = rem / N2;
int j = rem % N2;
float dist_sq = 0.0f;
for (int d = 0; d < D; d++) {
float diff = X1[b * N1 * D + i * D + d] - X2[b * N2 * D + j * D + d];
dist_sq += diff * diff;
}
K[b * N1 * N2 + i * N2 + j] = var * expf(-0.5f * dist_sq / l2);
}
torch::Tensor rbf_kernel_cuda(torch::Tensor X1, torch::Tensor X2, float var, float l2) {
int B = X1.size(0);
int N1 = X1.size(1);
int D = X1.size(2);
int N2 = X2.size(1);
auto K = torch::empty({B, N1, N2}, X1.options());
int total = B * N1 * N2;
int threads = 256;
int blocks = (total + threads - 1) / threads;
rbf_kernel_kernel<<<blocks, threads>>>(
X1.data_ptr<float>(),
X2.data_ptr<float>(),
K.data_ptr<float>(),
var, l2, B, N1, N2, D
);
return K;
}
'''
cpp_source = '''
torch::Tensor rbf_kernel_cuda(torch::Tensor X1, torch::Tensor X2, float var, float l2);
'''
rbf_module = load_inline(
name='rbf_kernel',
cpp_sources=[cpp_source],
cuda_sources=[cuda_source],
functions=['rbf_kernel_cuda'],
verbose=False
)
class ModelNew(nn.Module):
def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
super().__init__()
self.noise = noise
self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
self.log_variance = nn.Parameter(torch.tensor(variance).log())
def forward(
self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor
) -> tuple:
l = self.log_lengthscale.exp()
l2 = l * l
var = self.log_variance.exp()
K_nn = rbf_module.rbf_kernel_cuda(X_train, X_train, var.item(), l2.item())
eye = torch.eye(K_nn.shape[-1], device=K_nn.device, dtype=K_nn.dtype).unsqueeze(0)
K_nn = K_nn + self.noise * eye
K_nm = rbf_module.rbf_kernel_cuda(X_train, X_test, var.item(), l2.item())
K_mm = rbf_module.rbf_kernel_cuda(X_test, X_test, var.item(), l2.item())
L = torch.linalg.cholesky(K_nn)
alpha = torch.cholesky_solve(Y_train, L)
mean = K_nm.transpose(-1, -2) @ alpha
v = torch.linalg.solve_triangular(L, K_nm, upper=False)
var_out = K_mm.diagonal(dim1=-2, dim2=-1) - (v ** 2).sum(dim=-2)
var_out = var_out.clamp(min=1e-6)
return mean, var_out