FW-GLM-5-1 · popcorn · pop_l123_all_gpt
correct 7_GaussianProcessRegression.py
model
FW-GLM-5-1
turns / max
14 / 15
tool calls
14
tokens (total)
267213
wall clock
2008.4s
truncated
no
backend
cuda fp32
variant
popcorn
runtime
0.57 μs
ref runtime
0.82 μs
speedup
1.43x
started
2026-05-11T19:55:00Z
timingkernelbench.timing
kernel runtime
0.57 μs
ref runtime
0.82 μs
speedup
1.43x
kernel mean / median / std
0.57 / — / 0.01 μs
ref mean / median / std
0.82 / — / 0.08 μs
numerical precisioneval_kernel_against_ref
max abs error
6.48e-05
mean abs error
5.72e-06
max rel error
0.02
mean rel error
3.34e-05
gpu memoryextended_metrics.measure_memory
kernel peak
33.15 MB
ref peak
36.03 MB
kernel / ref
0.92x
kernel launches / fusiontorch.profiler
kernel launches
60
ref launches
140
fusion ratio (ref / kernel)
2.33x
total cuda time
1851 μs
energyNVML (pynvml)
kernel mJ / run
241.44
ref mJ / run
0.00
ratio (ref / kernel)
—
avg power
442.69 W
ref avg power
0.00 W
SOL (speed-of-light)nsight_hardware_counters
SOL score (0–1)
1.000
dram util %
18.9%
compute util %
100.0%
bottleneck
compute-bound
dominant pipe
FP32
arithmetic intensity
—
ridge point
20.00
roofline / occupancynsight_hardware_counters
dram bandwidth
633.74 GB/s
dram util %
18.9%
fp32 tflops
—
fp32 util %
—
fp16 tflops
—
occupancy %
757.4%
bottleneck
compute-bound
dominant pipe %
137.0%
arithmetic intensity
—
ridge point
20.00
L1 hit %
—
L2 hit %
4439.5%
ld sectors / req
267.25
st sectors / req
—
regs / thread
1630
smem / block
123776 B
block size
14081
peak bw
3350.00 GB/s
peak fp32 tflops
67.00
peak fp16 tflops
1979.00
warp stalls (top 5)nsight
long_scoreboard
41781.8%
short_scoreboard
15621.1%
mio_throttle
4429.1%
reference PyTorch source (the prompt the agent sees)
import torch
import torch.nn as nn


class Model(nn.Module):
    """
    Gaussian Process posterior predictive distribution via Cholesky
    decomposition.  Computes the predictive mean and variance at test
    points given training data and an RBF kernel.  The Cholesky solve
    is the computational bottleneck in exact GP inference.
    """

    def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
        super().__init__()
        self.noise = noise
        self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
        self.log_variance = nn.Parameter(torch.tensor(variance).log())

    def _rbf_kernel(self, X1, X2):
        l2 = self.log_lengthscale.exp() ** 2
        var = self.log_variance.exp()
        dist_sq = ((X1.unsqueeze(2) - X2.unsqueeze(1)) ** 2).sum(-1)
        return var * torch.exp(-0.5 * dist_sq / l2)

    def forward(
        self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor
    ) -> tuple:
        """
        Args:
            X_train: (B, N, D)
            Y_train: (B, N, 1)
            X_test:  (B, M, D)
        Returns:
            (mean, var):
                mean: (B, M, 1) – predictive mean
                var:  (B, M)    – predictive variance
        """
        K_nn = self._rbf_kernel(X_train, X_train)
        K_nn = K_nn + self.noise * torch.eye(K_nn.shape[-1], device=K_nn.device).unsqueeze(0)
        K_nm = self._rbf_kernel(X_train, X_test)
        K_mm = self._rbf_kernel(X_test, X_test)

        L = torch.linalg.cholesky(K_nn)
        alpha = torch.cholesky_solve(Y_train, L)

        mean = K_nm.transpose(-1, -2) @ alpha

        v = torch.linalg.solve_triangular(L, K_nm, upper=False)
        var = K_mm.diagonal(dim1=-2, dim2=-1) - (v ** 2).sum(dim=-2)
        var = var.clamp(min=1e-6)

        return mean, var


input_dim = 4
num_train = 128
num_test = 32
batch_size = 8


def get_inputs():
    p = popcorn_pri
    X_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), input_dim)
    Y_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), 1)
    X_test = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_test), input_dim)
    return [X_train, Y_train, X_test]


def get_init_inputs():
    return [input_dim]
turn 082.0s turn · 5.3s LLM · 76.7s tools · tokens in=2,412 · out=506 · total=2,918
reasoning
Let me analyze this task. I need to implement a custom CUDA kernel for a Gaussian Process posterior predictive distribution computation. The key operations are: 1. RBF kernel computation between pairs of points 2. Cholesky decomposition 3. Cholesky solve 4. Matrix-vector multiplications 5. Triangular solve Let me first understand the dimensions: - X_train: (B, N, D) = (8, 128, 4) - Y_train: (B, N, 1) = (8, 128, 1) - X_test: (B, M, D) = (8, 32, 4) Key operations: 1. K_nn = RBF(X_train, X_train) → (B, N, N) = (8, 128, 128) 2. K_nm = RBF(X_train, X_test) → (B, N, M) = (8, 128, 32) 3. K_mm = RBF(X_test, X_test) → (B, M, M) = (8, 32, 32) 4. L = cholesky(K_nn) → (B, N, N) 5. alpha = cholesky_solve(Y_train, L) → (B, N, 1) 6. mean = K_nm.T @ alpha → (B, M, 1) 7. v = solve_triangular(L, K_nm, upper=False) → (B, N, M) 8. var = diag(K_mm) - (v^2).sum(dim=-2) → (B, M) The main computational bottlenecks are: 1. RBF kernel computation (pairwise squared distances) 2. Cholesky decomposition 3. Cholesky solve and triangular solve Let me start by getting GPU specs and then implementing an optimized kernel. For the RBF kernel, the distance computation is: dist_sq = ((X1.unsqueeze(2) - X2.unsqueeze(1)) ** 2).sum(-1) This gives the pairwise squared distances. For the batched matrix operations like Cholesky, I can leverage cuBLAS and cusolver for optimal performance. I'll start with a basic implementation and iterate from there.
assistantI'll analyze this Gaussian Process computation task and build an optimized CUDA kernel. Let me start by understanding the GPU specs and then work through the implementation.
call → get_gpu_specs
callget_gpu_specs {}
result ← get_gpu_specs (ok)
okget_gpu_specs GPU specs for NVIDIA H100 80GB HBM3: total memory (runtime): 79.1 GB spec entry: H100 GPU Architecture: Hopper GPU Memory: 80GB Memory Bandwidth: 3.35 TB/s FP64 TFLOPS: 34 FP64 Tensor Core TFLOPS: 67 FP32 TFLOPS: 67 TF32 Tensor Core TFLOPS: 989 with sparsity BFLOAT16 Tensore Core TFLOPS: 1979 with sparsity FP16 Tensor Core TFLOPS: 1979 with sparsity FP8 Tensor Core TFLOPS: 3958 with sparsity INT8 Tensor Core TOPS: 3958 with sparsity Register File Size: 64K 32-bit registers per SM Maximum number of registers per thread: 255 Maximum number of thread blocks per SM: 32 Shared memory capacity per SM: 228 KB Maximum shared memory per thread block: 227 KB
turn 136.3s turn · 1.4s LLM · 35.0s tools · tokens in=2,690 · out=23 · total=2,713
reasoning
Let me also get the roofline model to understand the hardware limits better.
call → ert_roofline
callert_roofline {}
result ← ert_roofline (ok)
okert_roofline ert_roofline PASSED: empirical roofline benchmarks complete. === Empirical Roofline Model === Device: NVIDIA H100 80GB HBM3 --- Measured Bandwidth --- L1 13.6 GB/s (working set: 32 KB) L2 927.6 GB/s (working set: 2048 KB) DRAM 2577.3 GB/s (working set: 262144 KB) --- Measured Compute Throughput --- FP32 51.85 TFLOPS FP16 (tensor core) 758.77 TFLOPS Ridge point (FP32): 20.12 FLOPs/byte Kernels with arithmetic intensity below the ridge point are memory-bound; above it they are compute-bound.
turn 2 · 1 tool call(s) · 255.9s turn · 39.6s LLM · tokens in=2,879 · out=3,946 · total=6,825 · 15,264 chars (click to expand)
turn 2255.9s turn · 39.6s LLM · 216.3s tools · tokens in=2,879 · out=3,946 · total=6,825
reasoning
Now let me write the initial implementation. The key operations are: 1. RBF kernel computation - squared distance matrix 2. Cholesky decomposition - could use cuSOLVER or custom implementation 3. Cholesky solve 4. Matrix-vector products For the H100, I should leverage: - High memory bandwidth (2.5 TB/s) - Tensor cores for matrix operations Let me start with a baseline implementation using standard CUDA for the distance computation and cuBLAS/cuSOLVER for the linear algebra operations. I'll structure the code as: 1. Custom kernel for RBF kernel computation 2. Use cuSOLVER for Cholesky decomposition 3. Use cuBLAS for triangular solve and matrix operations Let me write the first version:
assistantLet me write the initial kernel implementation with custom CUDA for the RBF kernel computation and cuSOLVER/cuBLAS for the linear algebra operations:
call → compile_kernel
callcompile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\nimport os\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n// Thread block size\n#define BLOCK_SIZE 256\n\n// RBF kernel computation: computes K(X1, X2) \n// X1: (B, N, D), X2: (B, M, D) -> K: (B, N, M)\n// Uses shared memory for X2 tile\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n if (b >= B) return;\n \n for (int i = threadIdx.x; i < N && i < M; i += blockDim.x) {\n K[b * N * M + i * M + i] += noise;\n }\n}\n\n// Add noise diagonal (same size N=N)\n__global__ void add_noise_diagonal_square_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute diagonal of K_mm kernel matrix\n__global__ void kernel_diagonal_kernel(\n const float* __restrict__ X,\n float* __restrict__ diag,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int D) {\n \n int b = blockIdx.x;\n int n = threadIdx.x;\n \n if (b >= B || n >= N) return;\n \n float var = expf(log_variance);\n // K(x, x) = var * exp(0) = var\n diag[b * N + n] = var;\n}\n\n// Compute mean = K_nm^T @ alpha\n__global__ void compute_mean_kernel(\n const float* __restrict__ K_nm,\n const float* __restrict__ alpha,\n float* __restrict__ mean,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum = 0.0f;\n for (int n = 0; n < N; n++) {\n // K_nm is (N, M), so K_nm^T @ alpha is (M, N) @ (N, 1) = (M, 1)\n // K_nm[b, n, m] = K_nm[b * N * M + n * M + m]\n sum += K_nm[b * N * M + n * M + m] * alpha[b * N + n];\n }\n mean[b * M + m] = sum;\n}\n\n// Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n// v is (B, N, M), so v^2 sum over N dimension\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// Helper class to manage cuSOLVER/cuBLAS handles\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Allocate output tensors\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n torch::Tensor K_mm_diag = torch::empty({B, M}, options);\n torch::Tensor mean = torch::empty({B, M, 1}, options);\n torch::Tensor var = torch::empty({B, M}, options);\n \n // Get handles\n SolverHandle& handle = get_solver_handle();\n \n // Compute K_nn\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal of K_nn\n add_noise_diagonal_square_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Compute K_mm diagonal\n kernel_diagonal_kernel<<<B, M>>>(\n X_test.data_ptr<float>(),\n K_mm_diag.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, M, D);\n \n // Cholesky decomposition using cuSOLVER\n torch::Tensor L = K_nn.clone(); // Will be overwritten with L\n \n float** d_A_array = nullptr;\n cudaMalloc(&d_A_array, B * sizeof(float*));\n \n std::vector<float*> h_A_array(B);\n for (int b = 0; b < B; b++) {\n h_A_array[b] = L.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_A_array, h_A_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n int lwork = 0;\n cusolverDnSpotrf_bufferSize(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n (float*)L.data_ptr<float>(),\n N,\n &lwork);\n \n float* d_work;\n cudaMalloc(&d_work, lwork * B); // Batched needs more workspace\n \n // Perform batched Cholesky using potrfBatched\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_A_array,\n N,\n handle.d_info,\n B);\n \n // Zero out upper triangle (L should be lower triangular)\n // cuSOLVER returns L in lower triangle, upper is untouched\n // We need to ensure upper is zero for triangular solve\n \n // Solve L @ alpha = Y_train (triangular solve)\n // Y_train is (B, N, 1), so alpha is also (B, N, 1)\n torch::Tensor alpha = Y_train.clone().contiguous();\n \n // Use cublasStrsmBatched for triangular solve\n // L @ alpha = Y_train -> alpha = L^{-1} @ Y_train\n float** d_alpha_array = nullptr;\n cudaMalloc(&d_alpha_array, B * sizeof(float*));\n std::vector<float*> h_alpha_array(B);\n for (int b = 0; b < B; b++) {\n h_alpha_array[b] = alpha.data_ptr<float>() + b * N;\n }\n cudaMemcpy(d_alpha_array, h_alpha_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // alpha = L^{-1} @ Y_train\n // L is lower triangular, so we use CUBLAS_SIDE_LEFT, CUBLAS_FILL_MODE_LOWER\n float one = 1.0f;\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, 1, // m, n (N x 1 matrix)\n &one,\n d_A_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Compute mean = K_nm^T @ alpha\n // K_nm is (B, N, M), alpha is (B, N, 1) -> mean is (B, M, 1)\n // This is equivalent to: mean = (K_nm^T @ alpha)\n // Using cublasSgemmBatched\n torch::Tensor mean_flat = torch::empty({B, M}, options);\n \n float** d_Knm_array = nullptr;\n cudaMalloc(&d_Knm_array, B * sizeof(float*));\n std::vector<float*> h_Knm_array(B);\n for (int b = 0; b < B; b++) {\n h_Knm_array[b] = K_nm.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_Knm_array, h_Knm_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float** d_mean_array = nullptr;\n cudaMalloc(&d_mean_array, B * sizeof(float*));\n std::vector<float*> h_mean_array(B);\n for (int b = 0; b < B; b++) {\n h_mean_array[b] = mean_flat.data_ptr<float>() + b * M;\n }\n cudaMemcpy(d_mean_array, h_mean_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // mean = K_nm^T @ alpha\n // K_nm is (N x M), K_nm^T is (M x N), alpha is (N x 1) -> mean is (M x 1)\n // gemm: C = alpha * op(A) * op(B) + beta * C\n // We want: mean = K_nm^T @ alpha\n // A = K_nm^T (M x N), B = alpha (N x 1), C = mean (M x 1)\n float zero = 0.0f;\n cublasSgemmBatched(\n handle.cublas_handle,\n CUBLAS_OP_T, // transpose K_nm\n CUBLAS_OP_N,\n M, 1, N, // m, n, k\n &one,\n d_Knm_array, N, // lda (K_nm is N x M, so lda = N)\n d_alpha_array, N, // ldb (alpha is N x 1, so ldb = N)\n &zero,\n d_mean_array, M, // ldc (mean is M x 1, so ldc = M)\n B);\n \n mean = mean_flat.unsqueeze(-1); // (B, M) -> (B, M, 1)\n \n // Solve L @ v = K_nm for v (triangular solve)\n // v = L^{-1} @ K_nm\n // v is (B, N, M)\n torch::Tensor v = K_nm.clone().contiguous();\n \n float** d_v_array = nullptr;\n cudaMalloc(&d_v_array, B * sizeof(float*));\n std::vector<float*> h_v_array(B);\n for (int b = 0; b < B; b++) {\n h_v_array[b] = v.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_v_array, h_v_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // v = L^{-1} @ K_nm\n // L is (N x N), K_nm is (N x M), v is (N x M)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, M, // m, n\n &one,\n d_A_array,\n N,\n d_v_array,\n N,\n B);\n \n // Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n // v is (B, N, M), sum over N dimension\n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n // Cleanup\n cudaFree(d_A_array);\n cudaFree(d_alpha_array);\n cudaFree(d_Knm_array);\n cudaFree(d_mean_array);\n cudaFree(d_v_array);\n cudaFree(d_work);\n \n return {mean, var};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n # Ensure inputs are contiguous and on GPU\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n mean, var = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n return mean, var" }
result ← compile_kernel (ok)
okcompile_kernel compile_kernel PASSED: kernel compiled without errors.
turn 3 · 1 tool call(s) · 76.9s turn · 31.8s LLM · tokens in=6,677 · out=3,779 · total=10,456 · 14,896 chars (click to expand)
turn 376.9s turn · 31.8s LLM · 45.1s tools · tokens in=6,677 · out=3,779 · total=10,456
reasoning
Great! It compiled successfully. Now let me test for correctness.
assistantThe kernel compiled successfully. Let me check for correctness:
call → run_correctness
callrun_correctness { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\nimport os\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n// Thread block size\n#define BLOCK_SIZE 256\n\n// RBF kernel computation: computes K(X1, X2) \n// X1: (B, N, D), X2: (B, M, D) -> K: (B, N, M)\n// Uses shared memory for X2 tile\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n if (b >= B) return;\n \n for (int i = threadIdx.x; i < N && i < M; i += blockDim.x) {\n K[b * N * M + i * M + i] += noise;\n }\n}\n\n// Add noise diagonal (same size N=N)\n__global__ void add_noise_diagonal_square_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute diagonal of K_mm kernel matrix\n__global__ void kernel_diagonal_kernel(\n const float* __restrict__ X,\n float* __restrict__ diag,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int D) {\n \n int b = blockIdx.x;\n int n = threadIdx.x;\n \n if (b >= B || n >= N) return;\n \n float var = expf(log_variance);\n // K(x, x) = var * exp(0) = var\n diag[b * N + n] = var;\n}\n\n// Compute mean = K_nm^T @ alpha\n__global__ void compute_mean_kernel(\n const float* __restrict__ K_nm,\n const float* __restrict__ alpha,\n float* __restrict__ mean,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum = 0.0f;\n for (int n = 0; n < N; n++) {\n // K_nm is (N, M), so K_nm^T @ alpha is (M, N) @ (N, 1) = (M, 1)\n // K_nm[b, n, m] = K_nm[b * N * M + n * M + m]\n sum += K_nm[b * N * M + n * M + m] * alpha[b * N + n];\n }\n mean[b * M + m] = sum;\n}\n\n// Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n// v is (B, N, M), so v^2 sum over N dimension\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// Helper class to manage cuSOLVER/cuBLAS handles\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Allocate output tensors\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n torch::Tensor K_mm_diag = torch::empty({B, M}, options);\n torch::Tensor mean = torch::empty({B, M, 1}, options);\n torch::Tensor var = torch::empty({B, M}, options);\n \n // Get handles\n SolverHandle& handle = get_solver_handle();\n \n // Compute K_nn\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal of K_nn\n add_noise_diagonal_square_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Compute K_mm diagonal\n kernel_diagonal_kernel<<<B, M>>>(\n X_test.data_ptr<float>(),\n K_mm_diag.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, M, D);\n \n // Cholesky decomposition using cuSOLVER\n torch::Tensor L = K_nn.clone(); // Will be overwritten with L\n \n float** d_A_array = nullptr;\n cudaMalloc(&d_A_array, B * sizeof(float*));\n \n std::vector<float*> h_A_array(B);\n for (int b = 0; b < B; b++) {\n h_A_array[b] = L.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_A_array, h_A_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n int lwork = 0;\n cusolverDnSpotrf_bufferSize(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n (float*)L.data_ptr<float>(),\n N,\n &lwork);\n \n float* d_work;\n cudaMalloc(&d_work, lwork * B); // Batched needs more workspace\n \n // Perform batched Cholesky using potrfBatched\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_A_array,\n N,\n handle.d_info,\n B);\n \n // Zero out upper triangle (L should be lower triangular)\n // cuSOLVER returns L in lower triangle, upper is untouched\n // We need to ensure upper is zero for triangular solve\n \n // Solve L @ alpha = Y_train (triangular solve)\n // Y_train is (B, N, 1), so alpha is also (B, N, 1)\n torch::Tensor alpha = Y_train.clone().contiguous();\n \n // Use cublasStrsmBatched for triangular solve\n // L @ alpha = Y_train -> alpha = L^{-1} @ Y_train\n float** d_alpha_array = nullptr;\n cudaMalloc(&d_alpha_array, B * sizeof(float*));\n std::vector<float*> h_alpha_array(B);\n for (int b = 0; b < B; b++) {\n h_alpha_array[b] = alpha.data_ptr<float>() + b * N;\n }\n cudaMemcpy(d_alpha_array, h_alpha_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // alpha = L^{-1} @ Y_train\n // L is lower triangular, so we use CUBLAS_SIDE_LEFT, CUBLAS_FILL_MODE_LOWER\n float one = 1.0f;\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, 1, // m, n (N x 1 matrix)\n &one,\n d_A_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Compute mean = K_nm^T @ alpha\n // K_nm is (B, N, M), alpha is (B, N, 1) -> mean is (B, M, 1)\n // This is equivalent to: mean = (K_nm^T @ alpha)\n // Using cublasSgemmBatched\n torch::Tensor mean_flat = torch::empty({B, M}, options);\n \n float** d_Knm_array = nullptr;\n cudaMalloc(&d_Knm_array, B * sizeof(float*));\n std::vector<float*> h_Knm_array(B);\n for (int b = 0; b < B; b++) {\n h_Knm_array[b] = K_nm.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_Knm_array, h_Knm_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float** d_mean_array = nullptr;\n cudaMalloc(&d_mean_array, B * sizeof(float*));\n std::vector<float*> h_mean_array(B);\n for (int b = 0; b < B; b++) {\n h_mean_array[b] = mean_flat.data_ptr<float>() + b * M;\n }\n cudaMemcpy(d_mean_array, h_mean_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // mean = K_nm^T @ alpha\n // K_nm is (N x M), K_nm^T is (M x N), alpha is (N x 1) -> mean is (M x 1)\n // gemm: C = alpha * op(A) * op(B) + beta * C\n // We want: mean = K_nm^T @ alpha\n // A = K_nm^T (M x N), B = alpha (N x 1), C = mean (M x 1)\n float zero = 0.0f;\n cublasSgemmBatched(\n handle.cublas_handle,\n CUBLAS_OP_T, // transpose K_nm\n CUBLAS_OP_N,\n M, 1, N, // m, n, k\n &one,\n d_Knm_array, N, // lda (K_nm is N x M, so lda = N)\n d_alpha_array, N, // ldb (alpha is N x 1, so ldb = N)\n &zero,\n d_mean_array, M, // ldc (mean is M x 1, so ldc = M)\n B);\n \n mean = mean_flat.unsqueeze(-1); // (B, M) -> (B, M, 1)\n \n // Solve L @ v = K_nm for v (triangular solve)\n // v = L^{-1} @ K_nm\n // v is (B, N, M)\n torch::Tensor v = K_nm.clone().contiguous();\n \n float** d_v_array = nullptr;\n cudaMalloc(&d_v_array, B * sizeof(float*));\n std::vector<float*> h_v_array(B);\n for (int b = 0; b < B; b++) {\n h_v_array[b] = v.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_v_array, h_v_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // v = L^{-1} @ K_nm\n // L is (N x N), K_nm is (N x M), v is (N x M)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, M, // m, n\n &one,\n d_A_array,\n N,\n d_v_array,\n N,\n B);\n \n // Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n // v is (B, N, M), sum over N dimension\n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n // Cleanup\n cudaFree(d_A_array);\n cudaFree(d_alpha_array);\n cudaFree(d_Knm_array);\n cudaFree(d_mean_array);\n cudaFree(d_v_array);\n cudaFree(d_work);\n \n return {mean, var};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n # Ensure inputs are contiguous and on GPU\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n mean, var = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n return mean, var" }
result ← run_correctness (fail)
failrun_correctness run_correctness FAILED: (0 / 3) trials did not all match. correctness_issue: Output mismatch max_difference: ['35.117359', '0.965680', '34.579006', '0.960969', '30.586508', '0.995575'] avg_difference: ['8.512644', '0.184736', '6.936083', '0.178406', '7.960468', '0.214028']
turn 4 · 1 tool call(s) · 259.1s turn · 32.7s LLM · tokens in=10,567 · out=3,906 · total=14,473 · 15,272 chars (click to expand)
turn 4259.1s turn · 32.7s LLM · 226.4s tools · tokens in=10,567 · out=3,906 · total=14,473
reasoning
There's an issue with the correctness. The mean values have a big difference (around 8-35), which suggests something is wrong with the Cholesky solve or matrix operations. Let me trace through the logic: 1. The reference uses `torch.linalg.cholesky(K_nn)` which gives us L where L is lower triangular and L @ L.T = K_nn 2. Then `alpha = torch.cholesky_solve(Y_train, L)` which solves L @ L.T @ alpha = Y_train, so alpha = (L @ L.T)^{-1} @ Y_train 3. Actually `cholesky_solve` solves A @ X = B where A = L @ L.T = K_nn, so X = K_nn^{-1} @ Y_train Let me check the reference implementation again: ```python L = torch.linalg.cholesky(K_nn) alpha = torch.cholesky_solve(Y_train, L) ``` `cholesky_solve` solves the equation A @ X = B where A is given by the Cholesky factor L (so A = L @ L.T = K_nn). This means it computes alpha = K_nn^{-1} @ Y_train. The way to do this with triangular solves is: 1. L @ L.T @ alpha = Y_train 2. L.T @ alpha = L^{-1} @ Y_train (first triangular solve) 3. alpha = L^{-T} @ (L^{-1} @ Y_train) = L^{-T} @ alpha_temp But I did only one triangular solve, which is wrong. I need to do two triangular solves. Actually, looking at `cholesky_solve` more carefully, it should do both solves internally. Let me use cuBLAS properly: For A = L @ L.T, we want to solve A @ alpha = Y_train: 1. Solve L @ y = Y_train for y (forward substitution, lower triangular, L is lower) 2. Solve L.T @ alpha = y for alpha (backward substitution, upper triangular, L.T is upper) In cuBLAS Strsm: - First solve: L @ y = Y_train - SIDE=LEFT, FILL_MODE=LOWER, OP=N, DIAG=NON_UNIT - y = L^{-1} @ Y_train - Second solve: L.T @ alpha = y - SIDE=LEFT, FILL_MODE=UPPER, OP=T, DIAG=NON_UNIT - alpha = L^{-T} @ y Actually, wait. Let me re-examine the matrix dimensions. In cuBLAS: - For strsmBatched: solves A @ X = alpha * B or X @ A = alpha * B (depending on SIDE) Let me trace through again. Actually I think the issue might be in how I'm handling the matrix transpose for the mean calculation, or maybe in the Strsm parameters. Actually, looking at it more carefully - I think the main issue is that I'm only doing one triangular solve but cholesky_solve does two triangular solves (one with L and one with L^T). Let me fix this to do both solves properly.
assistantThere's an issue with the Cholesky solve - I only did one triangular solve but `cholesky_solve` requires two (one with L and one with L^T). Let me fix this:
call → compile_kernel
callcompile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\nimport os\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n// Thread block size\n#define BLOCK_SIZE 256\n\n// RBF kernel computation: computes K(X1, X2) \n// X1: (B, N, D), X2: (B, M, D) -> K: (B, N, M)\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise diagonal (same size N=N)\n__global__ void add_noise_diagonal_square_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute diagonal of K_mm kernel matrix\n__global__ void kernel_diagonal_kernel(\n const float* __restrict__ X,\n float* __restrict__ diag,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int D) {\n \n int b = blockIdx.x;\n int n = threadIdx.x;\n \n if (b >= B || n >= N) return;\n \n float var = expf(log_variance);\n // K(x, x) = var * exp(0) = var\n diag[b * N + n] = var;\n}\n\n// Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n// v is (B, N, M), so v^2 sum over N dimension\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// Helper class to manage cuSOLVER/cuBLAS handles\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Allocate output tensors\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n torch::Tensor K_mm_diag = torch::empty({B, M}, options);\n torch::Tensor var = torch::empty({B, M}, options);\n \n // Get handles\n SolverHandle& handle = get_solver_handle();\n \n // Compute K_nn\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal of K_nn\n add_noise_diagonal_square_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Compute K_mm diagonal\n kernel_diagonal_kernel<<<B, M>>>(\n X_test.data_ptr<float>(),\n K_mm_diag.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, M, D);\n \n // Cholesky decomposition using cuSOLVER\n torch::Tensor L = K_nn.clone(); // Will be overwritten with L\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n \n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = L.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // Perform batched Cholesky using potrfBatched\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n // Solve for alpha using cholesky_solve (two triangular solves)\n // A @ alpha = Y_train where A = L @ L.T\n // Step 1: L @ y = Y_train (lower triangular solve)\n // Step 2: L.T @ alpha = y (upper triangular solve)\n \n torch::Tensor alpha = Y_train.squeeze(-1).clone().contiguous(); // (B, N)\n \n float** d_alpha_array = nullptr;\n cudaMalloc(&d_alpha_array, B * sizeof(float*));\n std::vector<float*> h_alpha_array(B);\n for (int b = 0; b < B; b++) {\n h_alpha_array[b] = alpha.data_ptr<float>() + b * N;\n }\n cudaMemcpy(d_alpha_array, h_alpha_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float one = 1.0f;\n \n // Step 1: y = L^{-1} @ Y_train (lower triangular solve)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, 1,\n &one,\n d_L_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Step 2: alpha = L^{-T} @ y (upper triangular solve with transpose)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_UPPER,\n CUBLAS_OP_T,\n CUBLAS_DIAG_NON_UNIT,\n N, 1,\n &one,\n d_L_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Compute mean = K_nm^T @ alpha\n // K_nm is (B, N, M), alpha is (B, N) -> mean is (B, M)\n torch::Tensor mean_flat = torch::empty({B, M}, options);\n \n float** d_Knm_array = nullptr;\n cudaMalloc(&d_Knm_array, B * sizeof(float*));\n std::vector<float*> h_Knm_array(B);\n for (int b = 0; b < B; b++) {\n h_Knm_array[b] = K_nm.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_Knm_array, h_Knm_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float** d_mean_array = nullptr;\n cudaMalloc(&d_mean_array, B * sizeof(float*));\n std::vector<float*> h_mean_array(B);\n for (int b = 0; b < B; b++) {\n h_mean_array[b] = mean_flat.data_ptr<float>() + b * M;\n }\n cudaMemcpy(d_mean_array, h_mean_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // mean = K_nm^T @ alpha\n // K_nm is (N x M), K_nm^T is (M x N), alpha is (N x 1) -> mean is (M x 1)\n float zero = 0.0f;\n cublasSgemmBatched(\n handle.cublas_handle,\n CUBLAS_OP_T, // transpose K_nm\n CUBLAS_OP_N,\n M, 1, N, // m, n, k\n &one,\n d_Knm_array, N, // lda (K_nm is N x M, so lda = N)\n d_alpha_array, N, // ldb (alpha is N x 1, so ldb = N)\n &zero,\n d_mean_array, M, // ldc (mean is M x 1, so ldc = M)\n B);\n \n torch::Tensor mean = mean_flat.unsqueeze(-1); // (B, M) -> (B, M, 1)\n \n // Solve L @ v = K_nm for v (triangular solve)\n // v = L^{-1} @ K_nm\n torch::Tensor v = K_nm.clone().contiguous();\n \n float** d_v_array = nullptr;\n cudaMalloc(&d_v_array, B * sizeof(float*));\n std::vector<float*> h_v_array(B);\n for (int b = 0; b < B; b++) {\n h_v_array[b] = v.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_v_array, h_v_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // v = L^{-1} @ K_nm (lower triangular solve)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, M,\n &one,\n d_L_array,\n N,\n d_v_array,\n N,\n B);\n \n // Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n // Cleanup\n cudaFree(d_L_array);\n cudaFree(d_alpha_array);\n cudaFree(d_Knm_array);\n cudaFree(d_mean_array);\n cudaFree(d_v_array);\n \n return {mean, var};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n # Ensure inputs are contiguous and on GPU\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n mean, var = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n return mean, var" }
result ← compile_kernel (ok)
okcompile_kernel compile_kernel PASSED: kernel compiled without errors.
turn 5 · 1 tool call(s) · 168.1s turn · 27.0s LLM · tokens in=13,832 · out=3,222 · total=17,054 · 13,179 chars (click to expand)
turn 5168.1s turn · 27.0s LLM · 141.1s tools · tokens in=13,832 · out=3,222 · total=17,054
reasoning
Good, it compiled. Let me check correctness again.
call → run_correctness
callrun_correctness { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\nimport os\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n// Thread block size\n#define BLOCK_SIZE 256\n\n// RBF kernel computation: computes K(X1, X2) \n// X1: (B, N, D), X2: (B, M, D) -> K: (B, N, M)\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise diagonal (same size N=N)\n__global__ void add_noise_diagonal_square_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute diagonal of K_mm kernel matrix\n__global__ void kernel_diagonal_kernel(\n const float* __restrict__ X,\n float* __restrict__ diag,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int D) {\n \n int b = blockIdx.x;\n int n = threadIdx.x;\n \n if (b >= B || n >= N) return;\n \n float var = expf(log_variance);\n // K(x, x) = var * exp(0) = var\n diag[b * N + n] = var;\n}\n\n// Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n// v is (B, N, M), so v^2 sum over N dimension\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// Helper class to manage cuSOLVER/cuBLAS handles\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Allocate output tensors\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n torch::Tensor K_mm_diag = torch::empty({B, M}, options);\n torch::Tensor var = torch::empty({B, M}, options);\n \n // Get handles\n SolverHandle& handle = get_solver_handle();\n \n // Compute K_nn\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal of K_nn\n add_noise_diagonal_square_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Compute K_mm diagonal\n kernel_diagonal_kernel<<<B, M>>>(\n X_test.data_ptr<float>(),\n K_mm_diag.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, M, D);\n \n // Cholesky decomposition using cuSOLVER\n torch::Tensor L = K_nn.clone(); // Will be overwritten with L\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n \n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = L.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // Perform batched Cholesky using potrfBatched\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n // Solve for alpha using cholesky_solve (two triangular solves)\n // A @ alpha = Y_train where A = L @ L.T\n // Step 1: L @ y = Y_train (lower triangular solve)\n // Step 2: L.T @ alpha = y (upper triangular solve)\n \n torch::Tensor alpha = Y_train.squeeze(-1).clone().contiguous(); // (B, N)\n \n float** d_alpha_array = nullptr;\n cudaMalloc(&d_alpha_array, B * sizeof(float*));\n std::vector<float*> h_alpha_array(B);\n for (int b = 0; b < B; b++) {\n h_alpha_array[b] = alpha.data_ptr<float>() + b * N;\n }\n cudaMemcpy(d_alpha_array, h_alpha_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float one = 1.0f;\n \n // Step 1: y = L^{-1} @ Y_train (lower triangular solve)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, 1,\n &one,\n d_L_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Step 2: alpha = L^{-T} @ y (upper triangular solve with transpose)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_UPPER,\n CUBLAS_OP_T,\n CUBLAS_DIAG_NON_UNIT,\n N, 1,\n &one,\n d_L_array,\n N,\n d_alpha_array,\n N,\n B);\n \n // Compute mean = K_nm^T @ alpha\n // K_nm is (B, N, M), alpha is (B, N) -> mean is (B, M)\n torch::Tensor mean_flat = torch::empty({B, M}, options);\n \n float** d_Knm_array = nullptr;\n cudaMalloc(&d_Knm_array, B * sizeof(float*));\n std::vector<float*> h_Knm_array(B);\n for (int b = 0; b < B; b++) {\n h_Knm_array[b] = K_nm.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_Knm_array, h_Knm_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n float** d_mean_array = nullptr;\n cudaMalloc(&d_mean_array, B * sizeof(float*));\n std::vector<float*> h_mean_array(B);\n for (int b = 0; b < B; b++) {\n h_mean_array[b] = mean_flat.data_ptr<float>() + b * M;\n }\n cudaMemcpy(d_mean_array, h_mean_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // mean = K_nm^T @ alpha\n // K_nm is (N x M), K_nm^T is (M x N), alpha is (N x 1) -> mean is (M x 1)\n float zero = 0.0f;\n cublasSgemmBatched(\n handle.cublas_handle,\n CUBLAS_OP_T, // transpose K_nm\n CUBLAS_OP_N,\n M, 1, N, // m, n, k\n &one,\n d_Knm_array, N, // lda (K_nm is N x M, so lda = N)\n d_alpha_array, N, // ldb (alpha is N x 1, so ldb = N)\n &zero,\n d_mean_array, M, // ldc (mean is M x 1, so ldc = M)\n B);\n \n torch::Tensor mean = mean_flat.unsqueeze(-1); // (B, M) -> (B, M, 1)\n \n // Solve L @ v = K_nm for v (triangular solve)\n // v = L^{-1} @ K_nm\n torch::Tensor v = K_nm.clone().contiguous();\n \n float** d_v_array = nullptr;\n cudaMalloc(&d_v_array, B * sizeof(float*));\n std::vector<float*> h_v_array(B);\n for (int b = 0; b < B; b++) {\n h_v_array[b] = v.data_ptr<float>() + b * N * M;\n }\n cudaMemcpy(d_v_array, h_v_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // v = L^{-1} @ K_nm (lower triangular solve)\n cublasStrsmBatched(\n handle.cublas_handle,\n CUBLAS_SIDE_LEFT,\n CUBLAS_FILL_MODE_LOWER,\n CUBLAS_OP_N,\n CUBLAS_DIAG_NON_UNIT,\n N, M,\n &one,\n d_L_array,\n N,\n d_v_array,\n N,\n B);\n \n // Compute variance: var = K_mm_diag - (v^2).sum(dim=-2)\n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n // Cleanup\n cudaFree(d_L_array);\n cudaFree(d_alpha_array);\n cudaFree(d_Knm_array);\n cudaFree(d_mean_array);\n cudaFree(d_v_array);\n \n return {mean, var};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n # Ensure inputs are contiguous and on GPU\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n mean, var = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n return mean, var" }
result ← run_correctness (fail)
failrun_correctness run_correctness FAILED: (0 / 3) trials did not all match. correctness_issue: Output mismatch max_difference: ['3114540.750000', '0.965680', '733087.750000', '0.960969', '104350.039062', '0.995575'] avg_difference: ['100750.984375', '0.184736', '19957.726562', '0.178406', '8938.557617', '0.214028']
turn 6 · 1 tool call(s) · 273.4s turn · 35.2s LLM · tokens in=17,177 · out=3,717 · total=20,894 · 14,494 chars (click to expand)
turn 6273.4s turn · 35.2s LLM · 238.2s tools · tokens in=17,177 · out=3,717 · total=20,894
reasoning
The variance values are correct but the mean is way off. Let me check the matrix dimensions and transpose operations more carefully. Looking at the PyTorch reference: ```python mean = K_nm.transpose(-1, -2) @ alpha ``` K_nm is (B, N, M) so K_nm.transpose(-1, -2) is (B, M, N). alpha is (B, N, 1) from cholesky_solve. So mean = (B, M, N) @ (B, N, 1) = (B, M, 1). Correct. But in my code, I have: - alpha as (B, N) after squeezing - I'm using it as column-major with ldb=N - K_nm is (N x M) row-major layout (from PyTorch) - But cuBLAS uses column-major layout The issue is that PyTorch uses row-major layout while cuBLAS uses column-major layout. When I pass a PyTorch tensor (row-major) to cuBLAS, I need to be careful about the interpretation. Let me think about this more carefully. In PyTorch (row-major): - K_nm has shape (B, N, M), stored as B matrices of (N, M) in row-major order - Each batch element K_nm[b] is a N×M matrix In cuBLAS (column-major): - When we pass the same memory, it interprets it as a matrix with leading dimension - For a N×M matrix stored row-major, the leading dimension is the stride between rows, which is M - But cuBLAS expects column-major, so it will interpret it as an M×N matrix! Actually, the key insight is that when you transpose in row-major, it's equivalent to not transposing in column-major (and vice versa). Let me try a different approach - use PyTorch operations for the matrix multiplications since they're more reliable, and just accelerate the kernel computations and Cholesky. Actually wait, let me think more carefully. In cuBLAS, when we call gemm: - A is (M×K) with leading dimension lda - B is (K×N) with leading dimension ldb - C is (M×N) with leading dimension ldc If I have a PyTorch tensor of shape (N, M) stored row-major: - In cuBLAS column-major interpretation, this is an (M×N) matrix - The leading dimension is N (stride between columns in row-major = stride between rows in column-major... no wait) Let me think again. In row-major: - element [i,j] is at offset i*stride + j, where stride = number of columns = M - So K_nm[b, n, m] = *(ptr + n*M + m) In column-major: - element [i,j] is at offset i + j*lda - If lda = N, then element [i,j] = *(ptr + i + j*N) So if we pass the same memory to cuBLAS with lda=N: - What was K_nm[n,m] in row-major becomes element [n,m] in column-major with lda=N - But wait, that's only correct if M=N... Actually the right way to handle this is: - For a row-major N×M matrix, pass it to cuBLAS as if it's column-major M×N matrix - So K_nm (N×M in PyTorch) becomes (M×N) in cuBLAS interpretation - Then lda = N (the row stride in PyTorch becomes the column stride in cuBLAS) So for computing mean = K_nm^T @ alpha: - In PyTorch: K_nm^T is (M×N), alpha is (N×1), result is (M×1) - In cuBLAS interpretation: - K_nm memory is (M×N) with lda=N - K_nm^T in PyTorch means no transpose in cuBLAS to get the same result - alpha is (N×1) with ldb=N - result is (M×1) with ldc=M Wait no, let me be more careful. The cuBLAS gemm API is: C = op(A) * op(B) + beta * C For row-major matrices passed to cuBLAS: - A (N×M) row-major appears as A^T (M×N) in column-major - So op(A) in row-major = op^T(A^T) in column-major This is confusing. Let me try a simpler approach: just use PyTorch for the matrix operations since they're well optimized anyway, and focus on custom CUDA for the kernel computation. Actually, let me check if PyTorch uses column-major internally... yes it does. So when I get a tensor from PyTorch and pass it to cuBLAS, the interpretation is: - PyTorch tensor shape (N, M) means N rows, M columns - In memory (column-major), element [i,j] is at i + j*N - cuBLAS with lda=N will read it correctly as an N×M column-major matrix So the leading dimension for a PyTorch tensor of shape (N, M) is N. Let me re-examine my code: - K_nm is (B, N, M) - so each batch is N×M, lda=N ✓ - alpha is (B, N, 1) squeezed to (B, N) - treated as N×1, ldb=N ✓ - mean should be (B, M, 1) - as M×1, ldc=M ✓ For mean = K_nm^T @ alpha: - K_nm^T is (M×N) - alpha is (N×1) - result is (M×1) In cuBLAS gemm: - C = op(A) * op(B) - I want C = K_nm^T * alpha - If I use transa=CUBLAS_OP_T, then op(A) = A^T - A is N×M, A^T is M×N ✓ - B is N×1 ✓ - C is M×1 ✓ So my code should be: - transa = CUBLAS_OP_T (to get K_nm^T) - transb = CUBLAS_OP_N - m = M, n = 1, k = N - A (K_nm) has lda = N (since it's N×M) - B (alpha) has ldb = N (since it's N×1) - C (mean) has ldc = M (since it's M×1) This is what I have. But wait - the shapes might be wrong because PyTorch stores (N, M) as column-major with leading dimension N. Let me verify. Actually, I think the issue might be with how I'm squeezing alpha. Let me check if Y_train has the right shape. Also, I'm squeezing Y_train which is (B, N, 1) to (B, N), but then using ldb=N in gemm. If alpha is squeezed to shape (B, N), it's stored as N elements, and ldb should be N for a N×1 matrix. That seems right. Let me check the actual issue by using PyTorch operations for the matmul part to verify the kernel and Cholesky are correct. Actually, I suspect the issue might be with the data pointers. When I allocate arrays for batched operations, I'm computing the offsets correctly but maybe the lda values are wrong. Let me simplify and use torch::matmul for the matrix operations, and only use custom CUDA for the kernel computation.
assistantThe mean calculation is incorrect - there's an issue with how I'm handling the cuBLAS matrix operations. The PyTorch row-major storage vs cuBLAS column-major interpretation is causing problems. Let me fix this by using PyTorch's built-in matmul operations which handle this correctly:
call → compile_kernel
callcompile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute variance\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L and intermediate values for further processing\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n // K_nn now contains L (lower triangular Cholesky factor)\n // Return K_nn (which is L), K_nm for PyTorch-side operations\n \n cudaFree(d_L_array);\n \n return {K_nn, K_nm};\n}\n\n// Compute variance using pre-solved v\ntorch::Tensor compute_variance_cuda(\n torch::Tensor K_mm_diag,\n torch::Tensor v) {\n \n CHECK_INPUT(K_mm_diag);\n CHECK_INPUT(v);\n \n int B = v.size(0);\n int N = v.size(1);\n int M = v.size(2);\n \n torch::Tensor var = torch::empty({B, M}, v.options());\n \n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n return var;\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\ntorch::Tensor compute_variance_cuda(\n torch::Tensor K_mm_diag,\n torch::Tensor v);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda', 'compute_variance_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha: L @ L.T @ alpha = Y_train\n # alpha = L^{-T} @ L^{-1} @ Y_train\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← compile_kernel (ok)
okcompile_kernel compile_kernel PASSED: kernel compiled without errors.
turn 7 · 1 tool call(s) · 47.0s turn · 16.4s LLM · tokens in=19,267 · out=2,026 · total=21,293 · 9,110 chars (click to expand)
turn 747.0s turn · 16.4s LLM · 30.6s tools · tokens in=19,267 · out=2,026 · total=21,293
reasoning
Good, let me test correctness now.
call → run_correctness
callrun_correctness { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// Compute variance\n__global__ void compute_variance_kernel(\n const float* __restrict__ K_mm_diag,\n const float* __restrict__ v,\n float* __restrict__ var,\n int B, int N, int M) {\n \n int b = blockIdx.x;\n int m = threadIdx.x;\n \n if (b >= B || m >= M) return;\n \n float sum_sq = 0.0f;\n for (int n = 0; n < N; n++) {\n float v_val = v[b * N * M + n * M + m];\n sum_sq += v_val * v_val;\n }\n \n float result = K_mm_diag[b * M + m] - sum_sq;\n var[b * M + m] = fmaxf(result, 1e-6f);\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n cublasHandle_t cublas_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cublasCreate(&cublas_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cublasDestroy(cublas_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L and intermediate values for further processing\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_LOWER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n // K_nn now contains L (lower triangular Cholesky factor)\n // Return K_nn (which is L), K_nm for PyTorch-side operations\n \n cudaFree(d_L_array);\n \n return {K_nn, K_nm};\n}\n\n// Compute variance using pre-solved v\ntorch::Tensor compute_variance_cuda(\n torch::Tensor K_mm_diag,\n torch::Tensor v) {\n \n CHECK_INPUT(K_mm_diag);\n CHECK_INPUT(v);\n \n int B = v.size(0);\n int N = v.size(1);\n int M = v.size(2);\n \n torch::Tensor var = torch::empty({B, M}, v.options());\n \n compute_variance_kernel<<<B, M>>>(\n K_mm_diag.data_ptr<float>(),\n v.data_ptr<float>(),\n var.data_ptr<float>(),\n B, N, M);\n \n return var;\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\ntorch::Tensor compute_variance_cuda(\n torch::Tensor K_mm_diag,\n torch::Tensor v);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda', 'compute_variance_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha: L @ L.T @ alpha = Y_train\n # alpha = L^{-T} @ L^{-1} @ Y_train\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← run_correctness (fail)
failrun_correctness run_correctness FAILED: (0 / 3) trials did not all match. correctness_issue: Output mismatch max_difference: ['8219928297472.000000', '0.965680', '5943059456.000000', '0.960969', '480822528.000000', '0.995575'] avg_difference: ['333003882496.000000', '0.184736', '180140304.000000', '0.178406', '17222972.000000', '0.214028']
turn 8 · 1 tool call(s) · 100.3s turn · 24.5s LLM · tokens in=21,427 · out=2,740 · total=24,167 · 11,428 chars (click to expand)
turn 8100.3s turn · 24.5s LLM · 75.8s tools · tokens in=21,427 · out=2,740 · total=24,167
reasoning
The mean values are blowing up. The problem is that my Cholesky is computing on the wrong triangle. In PyTorch, `cholesky` returns a lower triangular matrix, but I need to check if my cuSOLVER call is doing the same. Actually, looking at the PyTorch reference: ```python L = torch.linalg.cholesky(K_nn) ``` This returns a lower triangular matrix L. The `cholesky_solve` does: ``` alpha = L^{-T} @ L^{-1} @ Y_train ``` Let me verify my cuSOLVER output. The issue might be: 1. My cuSOLVER is overwriting K_nn in-place with L 2. But maybe cuSOLVER expects the matrix in a different format Actually, looking more carefully - cusolverDnSpotrfBatched expects the matrix in column-major format (since cuBLAS/cuSOLVER use column-major), but PyTorch uses row-major format for tensors. So my kernel is writing K_nn in row-major order, but cuSOLVER expects column-major. Let me check if this is the issue. In PyTorch row-major: - K_nn[b, i, j] at index b * N * N + i * N + j In cuSOLVER column-major: - Element (i, j) is at index i + j * N Wait, actually cuSOLVER works with column-major but PyTorch passes the data as-is. The issue is that PyTorch's `cholesky` and `cholesky_solve` interpret the same memory layout differently. Let me look at this more carefully. When I call cuSOLVER potrfBatched on data that PyTorch laid out in row-major format, cuSOLVER interprets it as column-major. This means: - If PyTorch has K_nn as a symmetric matrix (row-major), cuSOLVER sees its transpose - Since K_nn is symmetric, this shouldn't matter for the values - But the L factor will be written in column-major format After potrf, the lower triangle (in column-major) contains L. But PyTorch reads row-major, so what PyTorch sees as the "lower triangle" is actually the upper triangle in cuSOLVER's view. Let me try using CUBLAS_FILL_MODE_UPPER instead. This will tell cuSOLVER to compute L such that the upper triangle (in its column-major view) contains L. PyTorch will then see L in its lower triangle (row-major view). Actually, let me try a different approach - let me use cuSOLVER to do the Cholesky on the same triangle that PyTorch expects. Actually, looking at this more carefully, the real issue is: In PyTorch: - Memory layout: row-major - K_nn[b, i, j] is at position b*N*N + i*N + j When cuSOLVER's potrf reads this memory as column-major: - It sees A[i,j] at position i + j*N (for a single matrix) - So it sees the transpose of what PyTorch intends For a symmetric matrix, K_nn = K_nn^T, so this doesn't matter for the input. But for the output: - potrf with CUBLAS_FILL_MODE_LOWER writes L to the lower triangle in column-major - This is elements A[i,j] with i >= j - These are stored at positions i + j*N for i >= j In PyTorch row-major interpretation: - Position i + j*N (for i >= j) corresponds to... let's see - If PyTorch reads the same memory, element at linear index p maps to [p/N][p%N] (row-major) - So position i + j*N maps to [(i+j*N)/N][(i+j*N)%N] = [(i+j*N)/N][i] (for i+j*N < N*N) Hmm, this is getting complicated. Let me try a different approach: use potrf with CUBLAS_FILL_MODE_UPPER, which will put L^T in the upper triangle (column-major view). Then PyTorch will see L in its lower triangle (row-major view). Wait, actually I think I should just test this by trying both modes and see which gives correct results. Let me try CUBLAS_FILL_MODE_UPPER and see if that fixes things.
assistantThe issue is with row-major vs column-major interpretation between PyTorch and cuSOLVER. Let me fix the Cholesky decomposition by using the correct fill mode:
call → compile_kernel
callcompile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation - uses column-major for cuSOLVER compatibility\n// Input X is row-major: X[b, n, d] = data[b*N*D + n*D + d]\n// Output K is row-major: K[b, n, m] = data[b*N*M + n*M + m]\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L (lower triangular Cholesky factor) and K_nm\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // PyTorch stores matrices in row-major, cuSOLVER uses column-major\n // For symmetric matrices, this doesn't matter for input\n // But for output: use UPPER fill mode so that L^T is stored in upper triangle\n // (in column-major view), which PyTorch will see as lower triangle (row-major view)\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER, // Changed to UPPER\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n // K_nn now contains L in lower triangle (PyTorch row-major view)\n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← compile_kernel (ok)
okcompile_kernel compile_kernel PASSED: kernel compiled without errors.
turn 9 · 1 tool call(s) · 116.9s turn · 15.5s LLM · tokens in=23,248 · out=1,789 · total=25,037 · 7,904 chars (click to expand)
turn 9116.9s turn · 15.5s LLM · 101.4s tools · tokens in=23,248 · out=1,789 · total=25,037
reasoning
Let me run the correctness test to see if the fill mode change helps.
call → run_correctness
callrun_correctness { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation - uses column-major for cuSOLVER compatibility\n// Input X is row-major: X[b, n, d] = data[b*N*D + n*D + d]\n// Output K is row-major: K[b, n, m] = data[b*N*M + n*M + m]\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L (lower triangular Cholesky factor) and K_nm\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // PyTorch stores matrices in row-major, cuSOLVER uses column-major\n // For symmetric matrices, this doesn't matter for input\n // But for output: use UPPER fill mode so that L^T is stored in upper triangle\n // (in column-major view), which PyTorch will see as lower triangle (row-major view)\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER, // Changed to UPPER\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n // K_nn now contains L in lower triangle (PyTorch row-major view)\n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← run_correctness (ok)
okrun_correctness run_correctness PASSED: (3 / 3) trials all matched the reference. Numerical precision: max_abs_err=6.48e-05 mean_abs_err=5.72e-06 max_rel_err=1.51e-02
turn 10 · 1 tool call(s) · 141.9s turn · 16.3s LLM · tokens in=25,079 · out=1,867 · total=26,946 · 9,885 chars (click to expand)
turn 10141.9s turn · 16.3s LLM · 125.6s tools · tokens in=25,079 · out=1,867 · total=26,946
reasoning
The kernel is now correct. The key insight was using CUBLAS_FILL_MODE_UPPER with cuSOLVER's potrfBatched - this makes it interpret the row-major PyTorch storage as a symmetric matrix stored in the upper triangle (in column-major view), which is equivalent to lower triangle in row-major view. Now let me profile the kernel to see where optimization opportunities lie.
assistantThe kernel passes correctness. Now let me profile it to see how it performs:
call → profile_kernel
callprofile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation - uses column-major for cuSOLVER compatibility\n// Input X is row-major: X[b, n, d] = data[b*N*D + n*D + d]\n// Output K is row-major: K[b, n, m] = data[b*N*M + n*M + m]\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L (lower triangular Cholesky factor) and K_nm\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // PyTorch stores matrices in row-major, cuSOLVER uses column-major\n // For symmetric matrices, this doesn't matter for input\n // But for output: use UPPER fill mode so that L^T is stored in upper triangle\n // (in column-major view), which PyTorch will see as lower triangle (row-major view)\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER, // Changed to UPPER\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n // K_nn now contains L in lower triangle (PyTorch row-major view)\n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← profile_kernel (ok)
okprofile_kernel profile_kernel PASSED: profiling complete. === Kernel Profile Summary === --- Kernel Breakdown (by GPU time) --- #1: aten::matmul 37151.0μs (18%) calls=1 #2: aten::bmm 36947.0μs (18%) calls=1 #3: aten::cholesky_solve 25631.0μs (12%) calls=1 #4: aten::_cholesky_solve_helper 25584.0μs (12%) calls=1 #5: aten::pow 18343.0μs (9%) calls=1 ... +55 more kernels --- Timing --- GPU time: 523.71 μs --- Memory Bandwidth --- DRAM BW: 641.2/3350 GB/s (19.1%) read=641.2 write=0.0 GB/s Hit rates: L2=4426.4% --- Compute Throughput --- Dominant pipe: FP32 util=137.0% Pipe util: FMA=137.0%, Tensor=4.5% --- Roofline Analysis --- Ridge point (FP32): 20.00 FLOPs/byte Classification: COMPUTE-BOUND --- Occupancy --- Achieved: 753.6% Eligible warps/cycle: 8.06 Launch: regs/thread=1630, smem/blk=123776B, block=14081, grid=3085 --- Memory Access Quality --- Global ld coalescing: 267.25 sectors/req (267.2x wasted BW) --- Warp Stall Reasons (% of issue cycles) --- long_scoreboard 40213.7% #################### short_scoreboard 14434.7% #################### mio_throttle 4450.9% #################### --- Optimization Hints --- -> 40214% stalls: global memory latency (waiting for DRAM/L2). + sectors/req=267.2 -> uncoalesced global loads, restructure access pattern or use __ldg Try shared-memory tiling, prefetching, or reducing working set. -> Global load coalescing=267.2x (ideal=1.0) -> 267x wasted DRAM BW. Make per-warp accesses contiguous. -> Compute-bound but NOT using tensor cores. If applicable, use FP16/BF16 with torch.matmul or WMMA intrinsics.
turn 11 · 1 tool call(s) · 196.7s turn · 20.4s LLM · tokens in=27,436 · out=2,182 · total=29,618 · 9,549 chars (click to expand)
turn 11196.7s turn · 20.4s LLM · 176.3s tools · tokens in=27,436 · out=2,182 · total=29,618
reasoning
The profile shows that the kernel is already compute-bound but has some issues: 1. Global load coalescing is very poor (267x wasted bandwidth) - this is in my RBF kernel 2. Memory latency stalls (long_scoreboard) 3. The matmul operations are taking a lot of time The main issue is that my RBF kernel has poor memory access patterns. Each thread accesses X elements with stride D (which is only 4), but the K output accesses are strided as well. Let me optimize the RBF kernel by: 1. Using shared memory to cache tiles of X data 2. Improving memory coalescing Also, I notice the profile shows I'm compute-bound but not using tensor cores. I could try to leverage PyTorch's efficient matmul which uses tensor cores. Let me rewrite the kernel with better memory access patterns:
assistantThe profile shows the RBF kernel has poor memory coalescing (267x wasted bandwidth). Let me optimize the kernel by using shared memory tiling for better memory access patterns:
call → compile_kernel
callcompile_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 32\n\n// Optimized RBF kernel using shared memory tiling\n// Each block computes a tile of K (BLOCK_SIZE x BLOCK_SIZE)\n// Threads are (BLOCK_SIZE, BLOCK_SIZE) organized\ntemplate<int TILE_SIZE>\n__global__ void rbf_kernel_tiled(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float l2,\n const float var,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y * TILE_SIZE + threadIdx.y;\n int m = blockIdx.x * TILE_SIZE + threadIdx.x;\n \n __shared__ float s_X1[TILE_SIZE][8]; // D=4, but pad to 8 for bank conflict avoidance\n __shared__ float s_X2[TILE_SIZE][8];\n \n float dist_sq = 0.0f;\n \n // Loop over D dimension in tiles\n for (int d_start = 0; d_start < D; d_start += 8) {\n // Load tile of X1 into shared memory\n if (n < N && d_start + threadIdx.x < D) {\n s_X1[threadIdx.y][threadIdx.x] = X1[b * N * D + n * D + d_start + threadIdx.x];\n } else {\n s_X1[threadIdx.y][threadIdx.x] = 0.0f;\n }\n \n // Load tile of X2 into shared memory\n if (m < M && d_start + threadIdx.y < D) {\n // Transpose the load for better shared memory access\n s_X2[threadIdx.x][threadIdx.y] = X2[b * M * D + m * D + d_start + threadIdx.y];\n } else {\n s_X2[threadIdx.x][threadIdx.y] = 0.0f;\n }\n \n __syncthreads();\n \n // Compute partial squared distance\n for (int d = 0; d < 8 && d_start + d < D; d++) {\n float diff = s_X1[threadIdx.y][d] - s_X2[threadIdx.x][d];\n dist_sq += diff * diff;\n }\n \n __syncthreads();\n }\n \n // Write result\n if (n < N && m < M) {\n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n }\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n // Compute K_nn using tiled kernel\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, (N + BLOCK_SIZE - 1) / BLOCK_SIZE, B);\n dim3 block_nn(BLOCK_SIZE, BLOCK_SIZE);\n rbf_kernel_tiled<BLOCK_SIZE><<<grid_nn, block_nn>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n l2, var,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm using tiled kernel\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, (N + BLOCK_SIZE - 1) / BLOCK_SIZE, B);\n rbf_kernel_tiled<BLOCK_SIZE><<<grid_nm, block_nn>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n l2, var,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // Use UPPER fill mode for row-major compatibility\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← compile_kernel (ok)
okcompile_kernel compile_kernel PASSED: kernel compiled without errors.
turn 12 · 1 tool call(s) · 27.4s turn · 17.2s LLM · tokens in=29,483 · out=1,998 · total=31,481 · 9,189 chars (click to expand)
turn 1227.4s turn · 17.2s LLM · 10.2s tools · tokens in=29,483 · out=1,998 · total=31,481
reasoning
The user is asking me to submit if I have a correct kernel. Let me check if the current kernel passes correctness first.
assistantLet me verify correctness before submitting:
call → run_correctness
callrun_correctness { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 32\n\n// Optimized RBF kernel using shared memory tiling\n// Each block computes a tile of K (BLOCK_SIZE x BLOCK_SIZE)\n// Threads are (BLOCK_SIZE, BLOCK_SIZE) organized\ntemplate<int TILE_SIZE>\n__global__ void rbf_kernel_tiled(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float l2,\n const float var,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y * TILE_SIZE + threadIdx.y;\n int m = blockIdx.x * TILE_SIZE + threadIdx.x;\n \n __shared__ float s_X1[TILE_SIZE][8]; // D=4, but pad to 8 for bank conflict avoidance\n __shared__ float s_X2[TILE_SIZE][8];\n \n float dist_sq = 0.0f;\n \n // Loop over D dimension in tiles\n for (int d_start = 0; d_start < D; d_start += 8) {\n // Load tile of X1 into shared memory\n if (n < N && d_start + threadIdx.x < D) {\n s_X1[threadIdx.y][threadIdx.x] = X1[b * N * D + n * D + d_start + threadIdx.x];\n } else {\n s_X1[threadIdx.y][threadIdx.x] = 0.0f;\n }\n \n // Load tile of X2 into shared memory\n if (m < M && d_start + threadIdx.y < D) {\n // Transpose the load for better shared memory access\n s_X2[threadIdx.x][threadIdx.y] = X2[b * M * D + m * D + d_start + threadIdx.y];\n } else {\n s_X2[threadIdx.x][threadIdx.y] = 0.0f;\n }\n \n __syncthreads();\n \n // Compute partial squared distance\n for (int d = 0; d < 8 && d_start + d < D; d++) {\n float diff = s_X1[threadIdx.y][d] - s_X2[threadIdx.x][d];\n dist_sq += diff * diff;\n }\n \n __syncthreads();\n }\n \n // Write result\n if (n < N && m < M) {\n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n }\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Main computation function\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n // Compute K_nn using tiled kernel\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, (N + BLOCK_SIZE - 1) / BLOCK_SIZE, B);\n dim3 block_nn(BLOCK_SIZE, BLOCK_SIZE);\n rbf_kernel_tiled<BLOCK_SIZE><<<grid_nn, block_nn>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n l2, var,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm using tiled kernel\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, (N + BLOCK_SIZE - 1) / BLOCK_SIZE, B);\n rbf_kernel_tiled<BLOCK_SIZE><<<grid_nm, block_nn>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n l2, var,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // Use UPPER fill mode for row-major compatibility\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← run_correctness (fail)
failrun_correctness correctness_kernel FAILED: AcceleratorError: CUDA error: an illegal memory access was encountered Search for `cudaErrorIllegalAddress' in https://docs.nvidia.com/cuda/cuda-runtime-api/group__CUDART__TYPES.html for more information. CUDA kernel errors might be asynchronously reported at some other API call, so the stacktrace below might be incorrect. For debugging consider passing CUDA_LAUNCH_BLOCKING=1 Compile with `TORCH_USE_CUDA_DSA` to enable device-side assertions.
turn 13 · FINAL · 1 tool call(s) · 226.2s turn · 14.8s LLM · tokens in=31,593 · out=1,745 · total=33,338 · 8,163 chars (click to expand)
turn 13226.2s turn · 14.8s LLM · 211.4s tools · tokens in=31,593 · out=1,745 · total=33,338 · FINAL
reasoning
The tiled kernel has an illegal memory access. Let me revert to the simpler working kernel and submit that instead, since it was passing correctness.
assistantLet me revert to the working kernel and submit:
call → submit_kernel
callsubmit_kernel { "kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\ncuda_source = \"\"\"\n#include <torch/extension.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <cusolverDn.h>\n#include <cublas_v2.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n#define BLOCK_SIZE 256\n\n// RBF kernel computation\n__global__ void rbf_kernel_kernel(\n const float* __restrict__ X1,\n const float* __restrict__ X2,\n float* __restrict__ K,\n const float log_lengthscale,\n const float log_variance,\n int B, int N, int M, int D) {\n \n int b = blockIdx.z;\n int n = blockIdx.y;\n int m = threadIdx.x + blockIdx.x * blockDim.x;\n \n if (b >= B || n >= N || m >= M) return;\n \n float l2 = expf(log_lengthscale) * expf(log_lengthscale);\n float var = expf(log_variance);\n \n float dist_sq = 0.0f;\n for (int d = 0; d < D; d++) {\n float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];\n dist_sq += diff * diff;\n }\n \n K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);\n}\n\n// Add noise to diagonal\n__global__ void add_noise_diagonal_kernel(\n float* __restrict__ K,\n float noise,\n int B, int N) {\n \n int b = blockIdx.x;\n int i = threadIdx.x;\n \n if (b >= B || i >= N) return;\n \n K[b * N * N + i * N + i] += noise;\n}\n\n// cuBLAS/cuSOLVER handle manager\nclass SolverHandle {\npublic:\n cusolverDnHandle_t cusolver_handle;\n int* d_info;\n \n SolverHandle() {\n cusolverDnCreate(&cusolver_handle);\n cudaMalloc(&d_info, sizeof(int));\n }\n \n ~SolverHandle() {\n cusolverDnDestroy(cusolver_handle);\n cudaFree(d_info);\n }\n};\n\nstatic SolverHandle& get_solver_handle() {\n static SolverHandle handle;\n return handle;\n}\n\n// Return L (lower triangular Cholesky factor) and K_nm\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance) {\n \n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n \n int B = X_train.size(0);\n int N = X_train.size(1);\n int D = X_train.size(2);\n int M = X_test.size(1);\n \n auto options = torch::TensorOptions()\n .dtype(torch::kFloat32)\n .device(torch::kCUDA)\n .requires_grad(false);\n \n // Compute K_nn\n torch::Tensor K_nn = torch::empty({B, N, N}, options);\n dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n dim3 block(BLOCK_SIZE);\n rbf_kernel_kernel<<<grid_nn, block>>>(\n X_train.data_ptr<float>(),\n X_train.data_ptr<float>(),\n K_nn.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, N, D);\n \n // Add noise to diagonal\n add_noise_diagonal_kernel<<<B, N>>>(\n K_nn.data_ptr<float>(), noise, B, N);\n \n // Compute K_nm\n torch::Tensor K_nm = torch::empty({B, N, M}, options);\n dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);\n rbf_kernel_kernel<<<grid_nm, block>>>(\n X_train.data_ptr<float>(),\n X_test.data_ptr<float>(),\n K_nm.data_ptr<float>(),\n log_lengthscale, log_variance,\n B, N, M, D);\n \n // Cholesky decomposition\n SolverHandle& handle = get_solver_handle();\n \n float** d_L_array = nullptr;\n cudaMalloc(&d_L_array, B * sizeof(float*));\n std::vector<float*> h_L_array(B);\n for (int b = 0; b < B; b++) {\n h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;\n }\n cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);\n \n // PyTorch stores matrices in row-major, cuSOLVER uses column-major\n // For symmetric matrices, this doesn't matter for input\n // But for output: use UPPER fill mode so that L^T is stored in upper triangle\n // (in column-major view), which PyTorch will see as lower triangle (row-major view)\n cusolverDnSpotrfBatched(\n handle.cusolver_handle,\n CUBLAS_FILL_MODE_UPPER,\n N,\n d_L_array,\n N,\n handle.d_info,\n B);\n \n cudaFree(d_L_array);\n \n // K_nn now contains L in lower triangle (PyTorch row-major view)\n return {K_nn, K_nm};\n}\n\"\"\"\n\ncpp_source = \"\"\"\nstd::vector<torch::Tensor> gp_forward_cuda(\n torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n float noise,\n float log_lengthscale,\n float log_variance);\n\"\"\"\n\ngp_extension = load_inline(\n name='gp_cuda',\n cpp_sources=cpp_source,\n cuda_sources=cuda_source,\n functions=['gp_forward_cuda'],\n extra_cuda_cflags=['-lcusolver', '-lcublas'],\n extra_ldflags=['-lcusolver', '-lcublas'],\n verbose=True\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n \n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n X_train = X_train.contiguous()\n Y_train = Y_train.contiguous()\n X_test = X_test.contiguous()\n \n if not X_train.is_cuda:\n X_train = X_train.cuda()\n Y_train = Y_train.cuda()\n X_test = X_test.cuda()\n \n L, K_nm = gp_extension.gp_forward_cuda(\n X_train, Y_train, X_test,\n self.noise,\n self.log_lengthscale.item(),\n self.log_variance.item()\n )\n \n # Solve for alpha using Cholesky solve\n alpha = torch.cholesky_solve(Y_train, L)\n \n # Compute mean = K_nm.T @ alpha\n mean = K_nm.transpose(-1, -2) @ alpha\n \n # Solve L @ v = K_nm (lower triangular solve)\n v = torch.linalg.solve_triangular(L, K_nm, upper=False)\n \n # Compute variance: K_mm diagonal - sum(v^2)\n var = self.log_variance.exp() - (v ** 2).sum(dim=-2)\n var = var.clamp(min=1e-6)\n \n return mean, var" }
result ← submit_kernel (ok)
oksubmit_kernel submit_kernel PASSED: (3 / 3) correctness trials all passed. Kernel runtime: 0.57 μs Runtime stats: mean=0.57μs median=?μs std=0.01μs Numerical precision: max_abs_err=6.48e-05 mean_abs_err=5.72e-06 max_rel_err=1.51e-02 Memory: 33.15 MB peak (ref: 36.03 MB, ratio: 0.9203x) Kernel launches: 60 (ref: 140, fusion ratio: 2.3333) Energy: 241.44 mJ/run (ref: 0.0 mJ, ratio: -1x) SOL score: 1.0
final submitted kernel (217 lines, 6,264 chars) — full source, untruncated
import torch
import torch.nn as nn
from torch.utils.cpp_extension import load_inline

cuda_source = """
#include <torch/extension.h>
#include <cuda.h>
#include <cuda_runtime.h>
#include <cusolverDn.h>
#include <cublas_v2.h>

#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x " must be a CUDA tensor")
#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x " must be contiguous")
#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)

#define BLOCK_SIZE 256

// RBF kernel computation
__global__ void rbf_kernel_kernel(
    const float* __restrict__ X1,
    const float* __restrict__ X2,
    float* __restrict__ K,
    const float log_lengthscale,
    const float log_variance,
    int B, int N, int M, int D) {
    
    int b = blockIdx.z;
    int n = blockIdx.y;
    int m = threadIdx.x + blockIdx.x * blockDim.x;
    
    if (b >= B || n >= N || m >= M) return;
    
    float l2 = expf(log_lengthscale) * expf(log_lengthscale);
    float var = expf(log_variance);
    
    float dist_sq = 0.0f;
    for (int d = 0; d < D; d++) {
        float diff = X1[b * N * D + n * D + d] - X2[b * M * D + m * D + d];
        dist_sq += diff * diff;
    }
    
    K[b * N * M + n * M + m] = var * expf(-0.5f * dist_sq / l2);
}

// Add noise to diagonal
__global__ void add_noise_diagonal_kernel(
    float* __restrict__ K,
    float noise,
    int B, int N) {
    
    int b = blockIdx.x;
    int i = threadIdx.x;
    
    if (b >= B || i >= N) return;
    
    K[b * N * N + i * N + i] += noise;
}

// cuBLAS/cuSOLVER handle manager
class SolverHandle {
public:
    cusolverDnHandle_t cusolver_handle;
    int* d_info;
    
    SolverHandle() {
        cusolverDnCreate(&cusolver_handle);
        cudaMalloc(&d_info, sizeof(int));
    }
    
    ~SolverHandle() {
        cusolverDnDestroy(cusolver_handle);
        cudaFree(d_info);
    }
};

static SolverHandle& get_solver_handle() {
    static SolverHandle handle;
    return handle;
}

// Return L (lower triangular Cholesky factor) and K_nm
std::vector<torch::Tensor> gp_forward_cuda(
    torch::Tensor X_train,
    torch::Tensor Y_train,
    torch::Tensor X_test,
    float noise,
    float log_lengthscale,
    float log_variance) {
    
    CHECK_INPUT(X_train);
    CHECK_INPUT(Y_train);
    CHECK_INPUT(X_test);
    
    int B = X_train.size(0);
    int N = X_train.size(1);
    int D = X_train.size(2);
    int M = X_test.size(1);
    
    auto options = torch::TensorOptions()
        .dtype(torch::kFloat32)
        .device(torch::kCUDA)
        .requires_grad(false);
    
    // Compute K_nn
    torch::Tensor K_nn = torch::empty({B, N, N}, options);
    dim3 grid_nn((N + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);
    dim3 block(BLOCK_SIZE);
    rbf_kernel_kernel<<<grid_nn, block>>>(
        X_train.data_ptr<float>(),
        X_train.data_ptr<float>(),
        K_nn.data_ptr<float>(),
        log_lengthscale, log_variance,
        B, N, N, D);
    
    // Add noise to diagonal
    add_noise_diagonal_kernel<<<B, N>>>(
        K_nn.data_ptr<float>(), noise, B, N);
    
    // Compute K_nm
    torch::Tensor K_nm = torch::empty({B, N, M}, options);
    dim3 grid_nm((M + BLOCK_SIZE - 1) / BLOCK_SIZE, N, B);
    rbf_kernel_kernel<<<grid_nm, block>>>(
        X_train.data_ptr<float>(),
        X_test.data_ptr<float>(),
        K_nm.data_ptr<float>(),
        log_lengthscale, log_variance,
        B, N, M, D);
    
    // Cholesky decomposition
    SolverHandle& handle = get_solver_handle();
    
    float** d_L_array = nullptr;
    cudaMalloc(&d_L_array, B * sizeof(float*));
    std::vector<float*> h_L_array(B);
    for (int b = 0; b < B; b++) {
        h_L_array[b] = K_nn.data_ptr<float>() + b * N * N;
    }
    cudaMemcpy(d_L_array, h_L_array.data(), B * sizeof(float*), cudaMemcpyHostToDevice);
    
    // PyTorch stores matrices in row-major, cuSOLVER uses column-major
    // For symmetric matrices, this doesn't matter for input
    // But for output: use UPPER fill mode so that L^T is stored in upper triangle
    // (in column-major view), which PyTorch will see as lower triangle (row-major view)
    cusolverDnSpotrfBatched(
        handle.cusolver_handle,
        CUBLAS_FILL_MODE_UPPER,
        N,
        d_L_array,
        N,
        handle.d_info,
        B);
    
    cudaFree(d_L_array);
    
    // K_nn now contains L in lower triangle (PyTorch row-major view)
    return {K_nn, K_nm};
}
"""

cpp_source = """
std::vector<torch::Tensor> gp_forward_cuda(
    torch::Tensor X_train,
    torch::Tensor Y_train,
    torch::Tensor X_test,
    float noise,
    float log_lengthscale,
    float log_variance);
"""

gp_extension = load_inline(
    name='gp_cuda',
    cpp_sources=cpp_source,
    cuda_sources=cuda_source,
    functions=['gp_forward_cuda'],
    extra_cuda_cflags=['-lcusolver', '-lcublas'],
    extra_ldflags=['-lcusolver', '-lcublas'],
    verbose=True
)

class ModelNew(nn.Module):
    def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
        super().__init__()
        self.noise = noise
        self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
        self.log_variance = nn.Parameter(torch.tensor(variance).log())
    
    def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:
        X_train = X_train.contiguous()
        Y_train = Y_train.contiguous()
        X_test = X_test.contiguous()
        
        if not X_train.is_cuda:
            X_train = X_train.cuda()
            Y_train = Y_train.cuda()
            X_test = X_test.cuda()
        
        L, K_nm = gp_extension.gp_forward_cuda(
            X_train, Y_train, X_test,
            self.noise,
            self.log_lengthscale.item(),
            self.log_variance.item()
        )
        
        # Solve for alpha using Cholesky solve
        alpha = torch.cholesky_solve(Y_train, L)
        
        # Compute mean = K_nm.T @ alpha
        mean = K_nm.transpose(-1, -2) @ alpha
        
        # Solve L @ v = K_nm (lower triangular solve)
        v = torch.linalg.solve_triangular(L, K_nm, upper=False)
        
        # Compute variance: K_mm diagonal - sum(v^2)
        var = self.log_variance.exp() - (v ** 2).sum(dim=-2)
        var = var.clamp(min=1e-6)
        
        return mean, var