correct
7_GaussianProcessRegression.py
started
2026-05-05T02:18:34Z
timingkernelbench.timing
kernel mean / median / std
0.85 / — / 3.04e-04 μs
ref mean / median / std
0.90 / — / 0.41 μs
numerical precisioneval_kernel_against_ref
gpu memoryextended_metrics.measure_memory
kernel launches / fusiontorch.profiler
fusion ratio (ref / kernel)
70.00x
roofline / occupancynsight_hardware_counters
warp stalls (top 5)nsight
reference PyTorch source (the prompt the agent sees)
import torch
import torch.nn as nn
class Model(nn.Module):
"""
Gaussian Process posterior predictive distribution via Cholesky
decomposition. Computes the predictive mean and variance at test
points given training data and an RBF kernel. The Cholesky solve
is the computational bottleneck in exact GP inference.
"""
def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
super().__init__()
self.noise = noise
self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
self.log_variance = nn.Parameter(torch.tensor(variance).log())
def _rbf_kernel(self, X1, X2):
l2 = self.log_lengthscale.exp() ** 2
var = self.log_variance.exp()
dist_sq = ((X1.unsqueeze(2) - X2.unsqueeze(1)) ** 2).sum(-1)
return var * torch.exp(-0.5 * dist_sq / l2)
def forward(
self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor
) -> tuple:
"""
Args:
X_train: (B, N, D)
Y_train: (B, N, 1)
X_test: (B, M, D)
Returns:
(mean, var):
mean: (B, M, 1) – predictive mean
var: (B, M) – predictive variance
"""
K_nn = self._rbf_kernel(X_train, X_train)
K_nn = K_nn + self.noise * torch.eye(K_nn.shape[-1], device=K_nn.device).unsqueeze(0)
K_nm = self._rbf_kernel(X_train, X_test)
K_mm = self._rbf_kernel(X_test, X_test)
L = torch.linalg.cholesky(K_nn)
alpha = torch.cholesky_solve(Y_train, L)
mean = K_nm.transpose(-1, -2) @ alpha
v = torch.linalg.solve_triangular(L, K_nm, upper=False)
var = K_mm.diagonal(dim1=-2, dim2=-1) - (v ** 2).sum(dim=-2)
var = var.clamp(min=1e-6)
return mean, var
input_dim = 4
num_train = 128
num_test = 32
batch_size = 8
def get_inputs():
p = popcorn_pri
X_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), input_dim)
Y_train = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_train), 1)
X_test = torch.randn(p.jitter_int(batch_size), p.jitter_int(num_test), input_dim)
return [X_train, Y_train, X_test]
def get_init_inputs():
return [input_dim]
turn 0 · FINAL · 1 tool call(s) · 60.1s turn · 60.1s LLM · 9,706 chars (click to expand)
turn 060.1s turn · 60.1s LLM · 0.0s tools · FINAL
call → submit_kernel
callsubmit_kernel
{
"kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\n_cpp_src = r\"\"\"\n#include <torch/extension.h>\n#include <vector>\n\nstd::vector<torch::Tensor> gp_forward_cuda(torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n torch::Tensor log_lengthscale,\n torch::Tensor log_variance,\n double noise);\n\"\"\"\n\n_cuda_src = r\"\"\"\n#include <torch/extension.h>\n#include <ATen/cuda/CUDAContext.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n#include <vector>\n#include <math.h>\n\n#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x \" must be a CUDA tensor\")\n#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x \" must be contiguous\")\n#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)\n\n__device__ __forceinline__ int lidx(int i, int j) {\n return (i * (i + 1)) / 2 + j;\n}\n\n__device__ __forceinline__ float warp_sum(float v) {\n #pragma unroll\n for (int off = 16; off > 0; off >>= 1) v += __shfl_down_sync(0xffffffff, v, off);\n return v;\n}\n\n__global__ void gp_kernel(const float* __restrict__ Xtr,\n const float* __restrict__ Y,\n const float* __restrict__ Xte,\n const float* __restrict__ log_l_ptr,\n const float* __restrict__ log_v_ptr,\n float noise,\n float* __restrict__ mean,\n float* __restrict__ var_out,\n int B, int N, int D, int M) {\n int b = blockIdx.x;\n if (b >= B) return;\n int tid = threadIdx.x;\n\n extern __shared__ float sh[];\n int pack = N * (N + 1) / 2;\n float* L = sh; // packed lower triangular matrix\n float* alpha = sh + pack; // length N, first z then alpha\n float* vbuf = alpha + N; // 4 x N triangular solve workspace\n\n float ell = expf(log_l_ptr[0]);\n float inv_2_l2 = 0.5f / (ell * ell);\n float sig2 = expf(log_v_ptr[0]);\n\n const float* Xb = Xtr + ((long long)b * N * D);\n const float* Yb = Y + ((long long)b * N);\n const float* Tst = Xte + ((long long)b * M * D);\n\n // Build the lower half of K(X_train, X_train) + noise*I.\n int NN = N * N;\n for (int t = tid; t < NN; t += blockDim.x) {\n int i = t / N;\n int j = t - i * N;\n if (i >= j) {\n float ds = 0.0f;\n for (int d = 0; d < D; ++d) {\n float diff = Xb[i * D + d] - Xb[j * D + d];\n ds += diff * diff;\n }\n float val = sig2 * expf(-ds * inv_2_l2);\n if (i == j) val += noise;\n L[lidx(i, j)] = val;\n }\n }\n __syncthreads();\n\n // In-place Cholesky factorization of the packed matrix. One block handles\n // one GP, with parallelism across rows for each column.\n for (int j = 0; j < N; ++j) {\n if (tid == 0) {\n float s = L[lidx(j, j)];\n for (int k = 0; k < j; ++k) {\n float ljk = L[lidx(j, k)];\n s -= ljk * ljk;\n }\n L[lidx(j, j)] = sqrtf(fmaxf(s, 1.0e-20f));\n }\n __syncthreads();\n float diag = L[lidx(j, j)];\n for (int i = j + 1 + tid; i < N; i += blockDim.x) {\n float s = L[lidx(i, j)];\n for (int k = 0; k < j; ++k) {\n s -= L[lidx(i, k)] * L[lidx(j, k)];\n }\n L[lidx(i, j)] = s / diag;\n }\n __syncthreads();\n }\n\n // Solve K alpha = y through the Cholesky factor. Single RHS, so the\n // sequential solve is tiny compared with the factorization.\n if (tid == 0) {\n for (int i = 0; i < N; ++i) {\n float s = Yb[i];\n for (int k = 0; k < i; ++k) s -= L[lidx(i, k)] * alpha[k];\n alpha[i] = s / L[lidx(i, i)];\n }\n for (int i = N - 1; i >= 0; --i) {\n float s = alpha[i];\n for (int k = i + 1; k < N; ++k) s -= L[lidx(k, i)] * alpha[k];\n alpha[i] = s / L[lidx(i, i)];\n }\n }\n __syncthreads();\n\n // Predictive mean and variance. Process four test points at a time, one\n // warp per test point. The forward triangular solve dot products are\n // parallelized within the warp.\n int warp = tid >> 5;\n int lane = tid & 31;\n for (int g = 0; g < M; g += 4) {\n int m = g + warp;\n float mean_acc = 0.0f;\n float vv_acc = 0.0f;\n if (m < M) {\n float* vw = vbuf + warp * N;\n const float* Xt = Tst + m * D;\n for (int i = 0; i < N; ++i) {\n float kval = 0.0f;\n if (lane == 0) {\n float ds = 0.0f;\n for (int d = 0; d < D; ++d) {\n float diff = Xb[i * D + d] - Xt[d];\n ds += diff * diff;\n }\n kval = sig2 * expf(-ds * inv_2_l2);\n }\n float dot = 0.0f;\n for (int k = lane; k < i; k += 32) {\n dot += L[lidx(i, k)] * vw[k];\n }\n dot = warp_sum(dot);\n if (lane == 0) {\n float vi = (kval - dot) / L[lidx(i, i)];\n vw[i] = vi;\n mean_acc += kval * alpha[i];\n vv_acc += vi * vi;\n }\n __syncwarp();\n }\n if (lane == 0) {\n float vr = sig2 - vv_acc;\n if (vr < 1.0e-6f) vr = 1.0e-6f;\n mean[((long long)b * M + m)] = mean_acc;\n var_out[(long long)b * M + m] = vr;\n }\n }\n __syncthreads();\n }\n}\n\nstd::vector<torch::Tensor> gp_forward_cuda(torch::Tensor X_train,\n torch::Tensor Y_train,\n torch::Tensor X_test,\n torch::Tensor log_lengthscale,\n torch::Tensor log_variance,\n double noise) {\n CHECK_INPUT(X_train);\n CHECK_INPUT(Y_train);\n CHECK_INPUT(X_test);\n CHECK_INPUT(log_lengthscale);\n CHECK_INPUT(log_variance);\n TORCH_CHECK(X_train.scalar_type() == torch::kFloat32, \"X_train must be float32\");\n TORCH_CHECK(Y_train.scalar_type() == torch::kFloat32, \"Y_train must be float32\");\n TORCH_CHECK(X_test.scalar_type() == torch::kFloat32, \"X_test must be float32\");\n\n int B = (int)X_train.size(0);\n int N = (int)X_train.size(1);\n int D = (int)X_train.size(2);\n int M = (int)X_test.size(1);\n\n auto mean = torch::empty({B, M, 1}, X_train.options());\n auto var = torch::empty({B, M}, X_train.options());\n\n int threads = 128;\n int pack = N * (N + 1) / 2;\n size_t shmem = (size_t)(pack + N + 4 * N) * sizeof(float);\n cudaStream_t stream = at::cuda::getCurrentCUDAStream();\n gp_kernel<<<B, threads, shmem, stream>>>(\n X_train.data_ptr<float>(), Y_train.data_ptr<float>(), X_test.data_ptr<float>(),\n log_lengthscale.data_ptr<float>(), log_variance.data_ptr<float>(), (float)noise,\n mean.data_ptr<float>(), var.data_ptr<float>(), B, N, D, M);\n C10_CUDA_KERNEL_LAUNCH_CHECK();\n return {mean, var};\n}\n\"\"\"\n\n_gp_ext = load_inline(\n name=\"gp_cholesky_predict_ext_v1\",\n cpp_sources=_cpp_src,\n cuda_sources=_cuda_src,\n functions=[\"gp_forward_cuda\"],\n extra_cuda_cflags=[\"-O3\"],\n extra_cflags=[\"-O3\"],\n verbose=False,\n)\n\n\nclass ModelNew(nn.Module):\n def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):\n super().__init__()\n self.noise = noise\n self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())\n self.log_variance = nn.Parameter(torch.tensor(variance).log())\n\n def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:\n return tuple(_gp_ext.gp_forward_cuda(X_train, Y_train, X_test, self.log_lengthscale, self.log_variance, float(self.noise)))\n"
}
result ← submit_kernel (ok)
oksubmit_kernel
submit_kernel PASSED: (5 / 5) correctness trials all passed.
Kernel runtime: 0.85 μs
Runtime stats: mean=0.85μs median=?μs std=0.00μs
Numerical precision: max_abs_err=8.62e-05 mean_abs_err=7.84e-06 max_rel_err=6.48e-02
Memory: 1056.28 MB peak (ref: 1060.28 MB, ratio: 0.9962x)
Kernel launches: 2 (ref: 140, fusion ratio: 70.0)
Energy: 244.66 mJ/run (ref: 0.0 mJ, ratio: -1x)
SOL score: 0.0
final submitted kernel (225 lines, 8,219 chars) — full source, untruncated
import torch
import torch.nn as nn
from torch.utils.cpp_extension import load_inline
_cpp_src = r"""
#include <torch/extension.h>
#include <vector>
std::vector<torch::Tensor> gp_forward_cuda(torch::Tensor X_train,
torch::Tensor Y_train,
torch::Tensor X_test,
torch::Tensor log_lengthscale,
torch::Tensor log_variance,
double noise);
"""
_cuda_src = r"""
#include <torch/extension.h>
#include <ATen/cuda/CUDAContext.h>
#include <cuda.h>
#include <cuda_runtime.h>
#include <vector>
#include <math.h>
#define CHECK_CUDA(x) TORCH_CHECK(x.is_cuda(), #x " must be a CUDA tensor")
#define CHECK_CONTIGUOUS(x) TORCH_CHECK(x.is_contiguous(), #x " must be contiguous")
#define CHECK_INPUT(x) CHECK_CUDA(x); CHECK_CONTIGUOUS(x)
__device__ __forceinline__ int lidx(int i, int j) {
return (i * (i + 1)) / 2 + j;
}
__device__ __forceinline__ float warp_sum(float v) {
#pragma unroll
for (int off = 16; off > 0; off >>= 1) v += __shfl_down_sync(0xffffffff, v, off);
return v;
}
__global__ void gp_kernel(const float* __restrict__ Xtr,
const float* __restrict__ Y,
const float* __restrict__ Xte,
const float* __restrict__ log_l_ptr,
const float* __restrict__ log_v_ptr,
float noise,
float* __restrict__ mean,
float* __restrict__ var_out,
int B, int N, int D, int M) {
int b = blockIdx.x;
if (b >= B) return;
int tid = threadIdx.x;
extern __shared__ float sh[];
int pack = N * (N + 1) / 2;
float* L = sh; // packed lower triangular matrix
float* alpha = sh + pack; // length N, first z then alpha
float* vbuf = alpha + N; // 4 x N triangular solve workspace
float ell = expf(log_l_ptr[0]);
float inv_2_l2 = 0.5f / (ell * ell);
float sig2 = expf(log_v_ptr[0]);
const float* Xb = Xtr + ((long long)b * N * D);
const float* Yb = Y + ((long long)b * N);
const float* Tst = Xte + ((long long)b * M * D);
// Build the lower half of K(X_train, X_train) + noise*I.
int NN = N * N;
for (int t = tid; t < NN; t += blockDim.x) {
int i = t / N;
int j = t - i * N;
if (i >= j) {
float ds = 0.0f;
for (int d = 0; d < D; ++d) {
float diff = Xb[i * D + d] - Xb[j * D + d];
ds += diff * diff;
}
float val = sig2 * expf(-ds * inv_2_l2);
if (i == j) val += noise;
L[lidx(i, j)] = val;
}
}
__syncthreads();
// In-place Cholesky factorization of the packed matrix. One block handles
// one GP, with parallelism across rows for each column.
for (int j = 0; j < N; ++j) {
if (tid == 0) {
float s = L[lidx(j, j)];
for (int k = 0; k < j; ++k) {
float ljk = L[lidx(j, k)];
s -= ljk * ljk;
}
L[lidx(j, j)] = sqrtf(fmaxf(s, 1.0e-20f));
}
__syncthreads();
float diag = L[lidx(j, j)];
for (int i = j + 1 + tid; i < N; i += blockDim.x) {
float s = L[lidx(i, j)];
for (int k = 0; k < j; ++k) {
s -= L[lidx(i, k)] * L[lidx(j, k)];
}
L[lidx(i, j)] = s / diag;
}
__syncthreads();
}
// Solve K alpha = y through the Cholesky factor. Single RHS, so the
// sequential solve is tiny compared with the factorization.
if (tid == 0) {
for (int i = 0; i < N; ++i) {
float s = Yb[i];
for (int k = 0; k < i; ++k) s -= L[lidx(i, k)] * alpha[k];
alpha[i] = s / L[lidx(i, i)];
}
for (int i = N - 1; i >= 0; --i) {
float s = alpha[i];
for (int k = i + 1; k < N; ++k) s -= L[lidx(k, i)] * alpha[k];
alpha[i] = s / L[lidx(i, i)];
}
}
__syncthreads();
// Predictive mean and variance. Process four test points at a time, one
// warp per test point. The forward triangular solve dot products are
// parallelized within the warp.
int warp = tid >> 5;
int lane = tid & 31;
for (int g = 0; g < M; g += 4) {
int m = g + warp;
float mean_acc = 0.0f;
float vv_acc = 0.0f;
if (m < M) {
float* vw = vbuf + warp * N;
const float* Xt = Tst + m * D;
for (int i = 0; i < N; ++i) {
float kval = 0.0f;
if (lane == 0) {
float ds = 0.0f;
for (int d = 0; d < D; ++d) {
float diff = Xb[i * D + d] - Xt[d];
ds += diff * diff;
}
kval = sig2 * expf(-ds * inv_2_l2);
}
float dot = 0.0f;
for (int k = lane; k < i; k += 32) {
dot += L[lidx(i, k)] * vw[k];
}
dot = warp_sum(dot);
if (lane == 0) {
float vi = (kval - dot) / L[lidx(i, i)];
vw[i] = vi;
mean_acc += kval * alpha[i];
vv_acc += vi * vi;
}
__syncwarp();
}
if (lane == 0) {
float vr = sig2 - vv_acc;
if (vr < 1.0e-6f) vr = 1.0e-6f;
mean[((long long)b * M + m)] = mean_acc;
var_out[(long long)b * M + m] = vr;
}
}
__syncthreads();
}
}
std::vector<torch::Tensor> gp_forward_cuda(torch::Tensor X_train,
torch::Tensor Y_train,
torch::Tensor X_test,
torch::Tensor log_lengthscale,
torch::Tensor log_variance,
double noise) {
CHECK_INPUT(X_train);
CHECK_INPUT(Y_train);
CHECK_INPUT(X_test);
CHECK_INPUT(log_lengthscale);
CHECK_INPUT(log_variance);
TORCH_CHECK(X_train.scalar_type() == torch::kFloat32, "X_train must be float32");
TORCH_CHECK(Y_train.scalar_type() == torch::kFloat32, "Y_train must be float32");
TORCH_CHECK(X_test.scalar_type() == torch::kFloat32, "X_test must be float32");
int B = (int)X_train.size(0);
int N = (int)X_train.size(1);
int D = (int)X_train.size(2);
int M = (int)X_test.size(1);
auto mean = torch::empty({B, M, 1}, X_train.options());
auto var = torch::empty({B, M}, X_train.options());
int threads = 128;
int pack = N * (N + 1) / 2;
size_t shmem = (size_t)(pack + N + 4 * N) * sizeof(float);
cudaStream_t stream = at::cuda::getCurrentCUDAStream();
gp_kernel<<<B, threads, shmem, stream>>>(
X_train.data_ptr<float>(), Y_train.data_ptr<float>(), X_test.data_ptr<float>(),
log_lengthscale.data_ptr<float>(), log_variance.data_ptr<float>(), (float)noise,
mean.data_ptr<float>(), var.data_ptr<float>(), B, N, D, M);
C10_CUDA_KERNEL_LAUNCH_CHECK();
return {mean, var};
}
"""
_gp_ext = load_inline(
name="gp_cholesky_predict_ext_v1",
cpp_sources=_cpp_src,
cuda_sources=_cuda_src,
functions=["gp_forward_cuda"],
extra_cuda_cflags=["-O3"],
extra_cflags=["-O3"],
verbose=False,
)
class ModelNew(nn.Module):
def __init__(self, input_dim, noise=0.01, lengthscale=1.0, variance=1.0):
super().__init__()
self.noise = noise
self.log_lengthscale = nn.Parameter(torch.tensor(lengthscale).log())
self.log_variance = nn.Parameter(torch.tensor(variance).log())
def forward(self, X_train: torch.Tensor, Y_train: torch.Tensor, X_test: torch.Tensor) -> tuple:
return tuple(_gp_ext.gp_forward_cuda(X_train, Y_train, X_test, self.log_lengthscale, self.log_variance, float(self.noise)))