incorrect
7_Conv1d_Depthwise_Separable.py
started
2026-05-05T00:25:01Z
correctness issue:
timingkernelbench.timing
kernel mean / median / std
—
ref mean / median / std
0.56 / — / 0.00 μs
SOL (speed-of-light)nsight_hardware_counters
roofline / occupancynsight_hardware_counters
dram bandwidth
188.24 GB/s
warp stalls (top 5)nsight
reference PyTorch source (the prompt the agent sees)
import torch
import torch.nn as nn
class Model(nn.Module):
"""
Performs a depthwise-separable 1D convolution: a depthwise Conv1d (each channel independently)
followed by a pointwise Conv1d (1x1, mixes channels). Used in Enformer and genomic sequence
models for efficient spatial+channel factorized processing.
Args:
in_channels (int): Number of channels in the input.
out_channels (int): Number of channels produced by the pointwise convolution.
kernel_size (int): Kernel size of the depthwise convolution.
stride (int, optional): Stride of the depthwise convolution. Defaults to 1.
padding (int, optional): Padding for the depthwise convolution. Defaults to 0.
bias (bool, optional): If True, adds a learnable bias. Defaults to False.
"""
def __init__(self, in_channels: int, out_channels: int, kernel_size: int, stride: int = 1, padding: int = 0, bias: bool = False):
super(Model, self).__init__()
self.depthwise = nn.Conv1d(in_channels, in_channels, kernel_size, stride=stride, padding=padding, groups=in_channels, bias=bias)
self.pointwise = nn.Conv1d(in_channels, out_channels, kernel_size=1, bias=bias)
def forward(self, x: torch.Tensor) -> torch.Tensor:
x = self.depthwise(x)
x = self.pointwise(x)
return x
batch_size = 32
in_channels = 256
out_channels = 512
kernel_size = 9
seq_len = 4096
stride = 1
padding = 4
def get_inputs():
return [torch.randn(popcorn_pri.jitter_int(batch_size), in_channels, popcorn_pri.jitter_int(seq_len))]
def get_init_inputs():
return [in_channels, out_channels, kernel_size, stride, padding]turn 0 · FINAL · 1 tool call(s) · 42.1s turn · 42.1s LLM · 7,227 chars (click to expand)
turn 042.1s turn · 42.1s LLM · 0.0s tools · FINAL
reasoning
**Crafting a Python File**
I need to create a complete Python file and ensure I'm using load_inline properly. First, I have to check if weights from ModelNew are initialized the same way as when they’re usually instantiated with args. I'll need to define submodules and create nn.Conv1d modules to hold these weights for the custom forward method.
It sounds like both depthwise and pointwise attributes should be compatible, with specified input shapes needing to yield the correct output dimensions. It might get compute-heavy, so I'll think about optimizing for fixed sizes.
**Optimizing Convolutions in PyTorch**
I’m considering how PyTorch handles depthwise convolutions alongside 1x1 convolutions, possibly using cuDNN and GEMM for optimization. I wonder if I can create a custom solution that incorporates torch functions, but I might need to explore a cuBLAS extension since no reference fallback is available.
While the forward method could potentially call this extension, I really want to ensure it’s efficient. Compiling two kernels for depthwise and pointwise operations might be worthwhile, focusing on using tiled matrix multiplication for optimization. I’ll also think about how to fuse these operations to reduce overhead from Conv1d modules.
**Exploring matrix operations**
I'm thinking about how to combine pointwise bias with matrix multiplication (matmul). It seems like I could use `y.add_(pw_b)` for broadcasting, but the default setting for pointwise bias is false, which complicates things. Also, depthwise bias is set to false by default. I wonder if there's a way to adjust these defaults for my needs or if I need to rethink this approach entirely. Let’s see how these factors interact!
call → submit_kernel
callsubmit_kernel
{
"kernel_code": "import torch\nimport torch.nn as nn\nfrom torch.utils.cpp_extension import load_inline\n\n_cpp_src = r'''\n#include <torch/extension.h>\n\ntorch::Tensor depthwise_pointwise_forward(torch::Tensor x,\n torch::Tensor dw_w,\n torch::Tensor pw_w,\n torch::Tensor dw_b,\n torch::Tensor pw_b,\n int64_t stride,\n int64_t padding);\n'''\n\n_cuda_src = r'''\n#include <torch/extension.h>\n#include <ATen/cuda/CUDAContext.h>\n#include <cuda.h>\n#include <cuda_runtime.h>\n\n__global__ void depthwise_to_blc_kernel(const float* __restrict__ x,\n const float* __restrict__ w,\n const float* __restrict__ b,\n float* __restrict__ h,\n int B, int C, int L, int K,\n int Lout, int stride, int padding,\n bool has_bias) {\n int idx = blockIdx.x * blockDim.x + threadIdx.x;\n int total = B * Lout * C;\n if (idx >= total) return;\n\n int c = idx % C;\n int t = (idx / C) % Lout;\n int n = idx / (C * Lout);\n\n float acc = has_bias ? b[c] : 0.0f;\n int base = t * stride - padding;\n const float* x_base = x + ((n * C + c) * L);\n const float* w_base = w + c * K;\n\n #pragma unroll\n for (int k = 0; k < 16; ++k) {\n if (k < K) {\n int xi = base + k;\n if ((unsigned)xi < (unsigned)L) {\n acc += x_base[xi] * w_base[k];\n }\n }\n }\n h[idx] = acc;\n}\n\ntorch::Tensor depthwise_pointwise_forward(torch::Tensor x,\n torch::Tensor dw_w,\n torch::Tensor pw_w,\n torch::Tensor dw_b,\n torch::Tensor pw_b,\n int64_t stride64,\n int64_t padding64) {\n const int B = (int)x.size(0);\n const int C = (int)x.size(1);\n const int L = (int)x.size(2);\n const int K = (int)dw_w.size(2);\n const int O = (int)pw_w.size(0);\n const int stride = (int)stride64;\n const int padding = (int)padding64;\n const int Lout = (L + 2 * padding - K) / stride + 1;\n\n auto h = torch::empty({(int64_t)B * Lout, C}, x.options());\n\n int total = B * Lout * C;\n int threads = 256;\n int blocks = (total + threads - 1) / threads;\n const float* db = dw_b.numel() ? dw_b.data_ptr<float>() : nullptr;\n depthwise_to_blc_kernel<<<blocks, threads, 0, at::cuda::getCurrentCUDAStream()>>>(\n x.data_ptr<float>(), dw_w.data_ptr<float>(), db, h.data_ptr<float>(),\n B, C, L, K, Lout, stride, padding, dw_b.numel() != 0);\n\n // Pointwise 1x1 convolution is exactly a large GEMM: [B*Lout, C] x [C, O].\n auto y = at::matmul(h, pw_w.t());\n if (pw_b.numel() != 0) {\n y.add_(pw_b);\n }\n return y.view({B, Lout, O}).permute({0, 2, 1});\n}\n'''\n\n_ext = load_inline(\n name=\"dw_sep_conv1d_ext_v1\",\n cpp_sources=_cpp_src,\n cuda_sources=_cuda_src,\n functions=[\"depthwise_pointwise_forward\"],\n extra_cflags=[\"-O3\"],\n extra_cuda_cflags=[\"-O3\", \"--use_fast_math\"],\n verbose=False,\n)\n\nclass ModelNew(nn.Module):\n def __init__(self, in_channels: int, out_channels: int, kernel_size: int, stride: int = 1, padding: int = 0, bias: bool = False):\n super(ModelNew, self).__init__()\n self.depthwise = nn.Conv1d(in_channels, in_channels, kernel_size, stride=stride, padding=padding, groups=in_channels, bias=bias)\n self.pointwise = nn.Conv1d(in_channels, out_channels, kernel_size=1, bias=bias)\n self.stride = stride\n self.padding = padding\n self.register_buffer(\"_empty\", torch.empty(0), persistent=False)\n\n def forward(self, x: torch.Tensor) -> torch.Tensor:\n dw_b = self.depthwise.bias if self.depthwise.bias is not None else self._empty\n pw_b = self.pointwise.bias if self.pointwise.bias is not None else self._empty\n return _ext.depthwise_pointwise_forward(\n x, self.depthwise.weight, self.pointwise.weight, dw_b, pw_b, self.stride, self.padding\n )\n"
}
result ← submit_kernel (fail)
failsubmit_kernel
submit_kernel FAILED: correctness check did not pass (? trials).
runtime_error: t() expects a tensor with <= 2 dimensions, but self is 3D
final submitted kernel (115 lines, 4,413 chars) — full source, untruncated
import torch
import torch.nn as nn
from torch.utils.cpp_extension import load_inline
_cpp_src = r'''
#include <torch/extension.h>
torch::Tensor depthwise_pointwise_forward(torch::Tensor x,
torch::Tensor dw_w,
torch::Tensor pw_w,
torch::Tensor dw_b,
torch::Tensor pw_b,
int64_t stride,
int64_t padding);
'''
_cuda_src = r'''
#include <torch/extension.h>
#include <ATen/cuda/CUDAContext.h>
#include <cuda.h>
#include <cuda_runtime.h>
__global__ void depthwise_to_blc_kernel(const float* __restrict__ x,
const float* __restrict__ w,
const float* __restrict__ b,
float* __restrict__ h,
int B, int C, int L, int K,
int Lout, int stride, int padding,
bool has_bias) {
int idx = blockIdx.x * blockDim.x + threadIdx.x;
int total = B * Lout * C;
if (idx >= total) return;
int c = idx % C;
int t = (idx / C) % Lout;
int n = idx / (C * Lout);
float acc = has_bias ? b[c] : 0.0f;
int base = t * stride - padding;
const float* x_base = x + ((n * C + c) * L);
const float* w_base = w + c * K;
#pragma unroll
for (int k = 0; k < 16; ++k) {
if (k < K) {
int xi = base + k;
if ((unsigned)xi < (unsigned)L) {
acc += x_base[xi] * w_base[k];
}
}
}
h[idx] = acc;
}
torch::Tensor depthwise_pointwise_forward(torch::Tensor x,
torch::Tensor dw_w,
torch::Tensor pw_w,
torch::Tensor dw_b,
torch::Tensor pw_b,
int64_t stride64,
int64_t padding64) {
const int B = (int)x.size(0);
const int C = (int)x.size(1);
const int L = (int)x.size(2);
const int K = (int)dw_w.size(2);
const int O = (int)pw_w.size(0);
const int stride = (int)stride64;
const int padding = (int)padding64;
const int Lout = (L + 2 * padding - K) / stride + 1;
auto h = torch::empty({(int64_t)B * Lout, C}, x.options());
int total = B * Lout * C;
int threads = 256;
int blocks = (total + threads - 1) / threads;
const float* db = dw_b.numel() ? dw_b.data_ptr<float>() : nullptr;
depthwise_to_blc_kernel<<<blocks, threads, 0, at::cuda::getCurrentCUDAStream()>>>(
x.data_ptr<float>(), dw_w.data_ptr<float>(), db, h.data_ptr<float>(),
B, C, L, K, Lout, stride, padding, dw_b.numel() != 0);
// Pointwise 1x1 convolution is exactly a large GEMM: [B*Lout, C] x [C, O].
auto y = at::matmul(h, pw_w.t());
if (pw_b.numel() != 0) {
y.add_(pw_b);
}
return y.view({B, Lout, O}).permute({0, 2, 1});
}
'''
_ext = load_inline(
name="dw_sep_conv1d_ext_v1",
cpp_sources=_cpp_src,
cuda_sources=_cuda_src,
functions=["depthwise_pointwise_forward"],
extra_cflags=["-O3"],
extra_cuda_cflags=["-O3", "--use_fast_math"],
verbose=False,
)
class ModelNew(nn.Module):
def __init__(self, in_channels: int, out_channels: int, kernel_size: int, stride: int = 1, padding: int = 0, bias: bool = False):
super(ModelNew, self).__init__()
self.depthwise = nn.Conv1d(in_channels, in_channels, kernel_size, stride=stride, padding=padding, groups=in_channels, bias=bias)
self.pointwise = nn.Conv1d(in_channels, out_channels, kernel_size=1, bias=bias)
self.stride = stride
self.padding = padding
self.register_buffer("_empty", torch.empty(0), persistent=False)
def forward(self, x: torch.Tensor) -> torch.Tensor:
dw_b = self.depthwise.bias if self.depthwise.bias is not None else self._empty
pw_b = self.pointwise.bias if self.pointwise.bias is not None else self._empty
return _ext.depthwise_pointwise_forward(
x, self.depthwise.weight, self.pointwise.weight, dw_b, pw_b, self.stride, self.padding
)